Anoxybacillus sediminis: IRT44_01250
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Entry
IRT44_01250 CDS
T07711
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ased
Anoxybacillus sediminis
Pathway
ased03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ased00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IRT44_01250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ased03019
]
IRT44_01250
03009 Ribosome biogenesis [BR:
ased03009
]
IRT44_01250
Enzymes [BR:
ased01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IRT44_01250
Messenger RNA biogenesis [BR:
ased03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IRT44_01250
Ribosome biogenesis [BR:
ased03009
]
Prokaryotic type
rRNA helicases
IRT44_01250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HeLo
CARD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UFJ61514
LinkDB
All DBs
Position
complement(247254..248654)
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AA seq
466 aa
AA seq
DB search
MAKSFAMFGFRPELMQGIHDLFYKEPTPIQAEAIPLILEGKDVIGQAQTGTGKTAAFVLP
ILERLPPGKRDIQALILTPTRELSIQIAEEVEKLGKYLNVNVLSLHGGTDIERQLSKLKH
VVHIVVGTPGRVLDHMRRGSLHFGRISTLVLDEADKMMEMGFLEEVHEIIEGTPQHRQTL
LFSATMPDSVKKLAQYYMKQPPHIRIEAKQKTVESIEQIYYVVNQSDKMDALVDLLENEN
PYLCIIFANTQARVQQLTARLQENGFSAEALYGDLSQNKREQLMKQFRDIKFQYLVATDI
AARGLDVEGVTHVVNYDVPNDVESYIHRVGRTGRAGQKGIAISLVSPRQKSIMTRFAKAT
KAPIEEKLLVVGRHLDAGRRKRAEEREAYFAQLREQKAKEQLKEKEKQYAPIREALKKKI
KVKPGYKKKLERELESLKTLYEKNRRRQEAMAARKAAKGKKPRGRG
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatcgtttgcgatgtttggctttcgaccggagttgatgcagggcattcacgac
ctgttttataaagagccgacgccgattcaggcggaggcgatcccgctaattctcgaaggg
aaggacgtgatcggccaggcgcaaacggggacgggcaagaccgccgcgtttgtgctgccg
atcctggagcggctgccgccgggcaaacgggacattcaggcgctgatcctgacgcccacc
cgtgagctgtcgatccagatcgccgaagaagtggagaagctgggcaaatacctgaacgtc
aacgtactctctttgcacggcgggacggatattgaacggcagttgagcaagctcaagcat
gttgtccacatcgtcgtcggcaccccgggaagggtgctggaccacatgaggcggggctcg
cttcacttcggccgcatttccacgctggtgttggacgaggctgacaagatgatggagatg
ggctttcttgaggaggtccatgagattatcgaggggacgccgcagcaccggcaaacgctt
ctgttctccgccaccatgccggattcggtgaaaaagctggctcagtactacatgaagcag
ccgccccacatccgaatcgaggcaaagcagaagacggtggagagcattgaacaaatctac
tacgtggtcaatcagagcgacaagatggatgcgctggtggacctgttggaaaatgagaat
ccgtatctctgcatcatctttgccaacacccaggcgcgcgtccagcagttgacggcccgc
ctgcaggaaaacggcttttcggcggaagcgctgtacggcgacctgtcgcaaaacaagcgg
gaacagctgatgaagcagttccgcgacatcaagtttcagtacctggtggcaaccgacatc
gctgcccgcggtctggacgtcgaaggggtgacacacgtcgtcaactacgatgttcccaat
gacgtggagagctacatccaccgcgtcggccgcaccggacgggcggggcagaagggaatc
gccatctctcttgtctctccccgccaaaaaagcatcatgacccgcttcgccaaggcgacc
aaggcgccgattgaggaaaaactgctggtggtaggccgccatctggacgccggccgccgc
aagcgggcagaggagcgggaagcgtactttgcccaactgcgcgagcaaaaggccaaagaa
cagttgaaggaaaaggaaaagcagtacgcccccatccgcgaggcgctgaaaaagaagatc
aaggtgaagccgggctacaagaaaaagctggaacgggaactggaatcactcaagaccttg
tacgagaaaaaccgccgtcgccaagaggcaatggcggcccgcaaagcggcaaagggcaaa
aaaccgcgcggcaggggctaa
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