Brevibacillus sedimenti: IRT44_06260
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Entry
IRT44_06260 CDS
T07711
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ased
Brevibacillus sedimenti
Pathway
ased03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ased00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IRT44_06260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ased03021
]
IRT44_06260 (rpoC)
03400 DNA repair and recombination proteins [BR:
ased03400
]
IRT44_06260 (rpoC)
Enzymes [BR:
ased01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IRT44_06260 (rpoC)
Transcription machinery [BR:
ased03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IRT44_06260 (rpoC)
DNA repair and recombination proteins [BR:
ased03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IRT44_06260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UFJ62399
LinkDB
All DBs
Position
1315892..1319518
Genome browser
AA seq
1208 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGDTPLDKKQLLSEKEYRNYREKYGYSFQAMMGAEAIKRLLQ
EIDLDKEVEALKEELKTAQGQRRNRAIKRLEVLEAFRNSGNRPEWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVAKGLAHNIKSAKRKVERVQPEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGSYYLTLEREGAKGEGTVYRDPHDAIAAYQHGYISLHTRIALP
AKSLNKTSFTEEQKNALLVTTVGKLIFNEIFPPELPYINVPTKGNLQNGVPNEYFIFEKG
TNVKEFIKKLPDQGAVKKGFLGTIISECFRRFGTTETSKILDKIKELGFMYSTKAGITIA
VADIVVPEQKKVILEEADKKVQTVMTQYRRGLITEDERYDRVISIWSKAKDEVTDVLMKS
MDKFNAIYMMANSGARGNVSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGIRVSAIKDGKEEIEKL
ADRIIGRTCFETLRHPETGEIIVGRNQEITEEIADKIEKAGITEVYIRSVLSCRTSHGVC
KRCYGRNLATGSEVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAVISEIDGEVIDIREGKDRREIEVRGEAENKVYAVPYGSRIKVSVGTKLSA
GDELTEGSVDPKEMLKVRGQRGVSNYILQEVQKVYRMQGVEINDKHVEVMIRQMLRKLRV
IDSGDTDLLPGSYVEVHEFEQANAKVLMEGKTPAVGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDRLLGLKENVIIGKLVPAGTGMSRYRNIKVLSRAEQEAQANGGQE
QLEAVSVE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
gtgattgatgtgaacaacttcgaatacatgaagatcggcttggcttccccggacaagatc
cgttcctggtcgtacggggaagtgaaaaagccggagacgatcaactaccgcacactgaag
ccggaaaaggacggtttgttctgtgagcgcattttcggtccgaccaaggattgggagtgc
cactgcggcaagtacaagcgcgttcgctacaaaggcgtcgtgtgcgaccgctgcggcgtg
gaagtgacccgcgccaaggttcgtcgtgagcggatggggcacatcgaactggctgccccc
gtctctcacatctggtacttcaaagggatcccgagccgcatgggcctcgtgctcgacatg
tcgccgcgttccctggaagaagtcatctactttgcatcctacgtggtaaccgatccgggc
gatacgccgctggacaaaaaacagctgctgtccgaaaaggaataccgcaactatcgtgaa
aaatacggctactccttccaggcgatgatgggggcggaagcgatcaagcgcctgctccag
gaaatcgacttggacaaagaagtggaagcgctgaaggaagagctgaagacggcacaaggg
cagcggcgcaaccgcgcgatcaagcgcctcgaagtgctggaggcattccgcaactccggc
aaccgtccggagtggatggtgcttgacgtgctgccggtcattccgccggagctgcgtccg
atggttcagttggacgggggccgtttcgccacctccgacctgaacgacctgtaccgccgc
gtgatcaaccgcaacaaccggctgaagcgcctactggaactgggcgctccggacatcatc
gtgcaaaatgaaaagcgcatgctgcaggaagcggtggatgcgctgatcgacaacggccgc
cgcggccgtccggtgaccggtccgggcaaccgcccgctgaaatcgctcagccacatgctg
aaagggaaacagggccgtttccgccaaaacctgctgggtaagcgcgtggactattccggc
cgttccgtaattgtcgtcggcccgaacctgaaaatgtaccagtgcggtctgccgaaggaa
atggcgctggaactgttcaagccgttcgtgatgaaggaactggtggccaaaggtctcgcg
cacaacatcaagagcgccaaacgcaaggtggaacgcgtgcagcccgaagtgtgggacgtt
ctcgaggacgtcatccgcgaacacccggtgctcctgaaccgcgcccccaccctgcaccgt
cttggtatccaggcgttcgaaccggtactggtggaaggccgcgcgatccgtctgcacccg
ctcgtatgtacggcgtacaacgccgacttcgacggcgaccagatggctgtgcacgtgccg
ctttccgcagaggcgcaggcggaagcccgcatcctcatgctggcggcgcaaaacatcctg
aacccgaaagacgggaaaccagtcgtaacaccgtcccaggacatggtactgggttcgtat
tatctgaccttggagcgcgagggcgccaaaggcgaaggtacggtataccgcgatccgcat
gacgctattgctgcgtaccagcacggctacatcagcctgcatacgcgcatcgcgctgccg
gccaagagcctgaacaaaaccagctttaccgaagagcagaagaacgcgcttctggtcacg
accgtcgggaaactgattttcaacgaaatcttcccgccggaactgccgtacatcaacgtt
ccgaccaagggcaacctgcaaaacggcgtgccgaacgagtacttcatctttgaaaaaggc
acaaacgtaaaagagtttatcaagaagctgccggaccagggagccgtgaaaaaaggcttc
ctcggaacgatcatctccgagtgtttccgccgcttcggaacgacagaaacgtccaagatc
ctcgacaagatcaaagaactgggcttcatgtactcgaccaaggccgggatcaccattgct
gtcgccgacatcgtcgtgccggagcaaaagaaagtgattctggaagaggcggacaaaaag
gtacagaccgtcatgacgcagtaccgccgcggtctgattaccgaggacgagcgctacgac
cgggttatctccatctggtccaaggccaaggatgaagtgaccgatgtcctgatgaagtcc
atggacaaattcaacgcgatctacatgatggccaactccggtgcccgcggtaacgtgtcg
cagattacacagctggcggggatgcgcggtctcatggccaacccgtccggccggattatc
gagctgccgatcaagtccaacttccgtgaaggtctgaccgtattggagtactttatctcc
acgcacggcgcgcggaaaggtctcgccgacacggcgctgcggacggctgactcgggttat
ctgacccgccgtctcgtcgacgtggcccaggacgtgatcgtccgcgaagaggattgcggc
accgacaagggcatccgcgtctccgcgatcaaggacggcaaggaagaaatcgagaagctg
gctgaccgcatcatcggccgtacctgcttcgagaccctgcgccatccggagacgggcgaa
atcatcgtcggccgcaaccaggagatcaccgaggagatcgccgacaagatcgaaaaagcc
ggcatcaccgaggtgtatatccgcagcgtgctgtcctgccgcaccagccatggcgtctgc
aaacgctgctacggccgcaacctggcgaccgggtccgaagtggagatcggcgaagcagtc
ggcattatcgccgctcagtccatcggtgaaccgggtacccagctgacgatgcggacgttc
cacaccggtggggttgcgggtgacgacattacccaaggtttgccgcggattcaggagctg
ttcgaagcccgcaatccgaaagggcaagcggtcatctccgagatcgacggggaagtgatc
gacatccgcgaaggcaaagaccgccgcgaaatcgaggtgcgcggcgaggcggaaaacaag
gtgtacgccgttccgtacggttcccgcatcaaagtatccgtgggcaccaagctgagtgcc
ggcgacgagctcaccgaaggttccgttgacccgaaagaaatgctgaaagtacgcggccag
cgcggtgtgtccaactacatcctgcaagaggtgcaaaaagtataccggatgcagggggta
gaaattaacgacaagcacgtcgaggtcatgatccgtcagatgctgcgcaagctgcgcgtc
atcgacagcggagacaccgacctgctgccgggctcctacgtggaagtgcacgagttcgag
caggcaaacgccaaggtgctcatggaaggcaaaacgcctgccgtgggtcgtccggtcctg
ttggggattaccaaggcgtcgctcgaaaccgactccttcctgtcggccgcatccttccag
gaaacgacgcgcgtcctcaccgacgccgcgatcaagggcaaggtggaccgcctgctcggc
ctgaaggaaaacgtcattatcgggaaactggtaccggccggcaccggcatgtcgcgttac
cgcaacatcaaggtgttgagccgcgccgaacaggaagcgcaggccaacggaggtcaggaa
cagctggaagctgtttcggtagaatag
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integrated database retrieval system
