KEGG   Brevibacillus sedimenti: IRT44_15930
Entry
IRT44_15930       CDS       T07711                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ased  Brevibacillus sedimenti
Pathway
ased02024  Quorum sensing
ased03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ased00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IRT44_15930 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    IRT44_15930 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ased03019]
    IRT44_15930 (hfq)
   03036 Chromosome and associated proteins [BR:ased03036]
    IRT44_15930 (hfq)
Messenger RNA biogenesis [BR:ased03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     IRT44_15930 (hfq)
Chromosome and associated proteins [BR:ased03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    IRT44_15930 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 DUF150_C
Other DBs
NCBI-ProteinID: UFJ60734
LinkDB
Position
complement(3257791..3258033)
AA seq 80 aa
MKQSINIQDTFLNHLRKENIAVTIYLVNGFQLRGYIKAFDNFTIVIDSEGKQQLVYKHAI
STFTPQRPVSLMSQDNNQQA
NT seq 243 nt   +upstreamnt  +downstreamnt
atgaaacagtcgatcaacattcaagatacgttcctgaaccacttgcggaaggagaacatc
gctgtcaccatctacctggtaaacgggtttcaactgcgcggctacatcaaagcgtttgac
aactttaccatcgtgattgacagcgaaggtaagcagcagcttgtatacaagcatgccatt
tccacgttcacgccgcagcgtcccgtgtcgctcatgtctcaagacaacaatcagcaagca
tag

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