KEGG   Brevibacillus sedimenti: IRT44_16060
Entry
IRT44_16060       CDS       T07711                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ased  Brevibacillus sedimenti
Pathway
ased03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ased00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IRT44_16060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ased03019]
    IRT44_16060
   03009 Ribosome biogenesis [BR:ased03009]
    IRT44_16060
Enzymes [BR:ased01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     IRT44_16060
Messenger RNA biogenesis [BR:ased03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     IRT44_16060
Ribosome biogenesis [BR:ased03009]
 Prokaryotic type
  rRNA helicases
   IRT44_16060
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: UFJ60757
LinkDB
Position
complement(3287467..3289053)
AA seq 528 aa
MTIFSDFPLHKSILQAIYDMGFEEPSPIQAACIPKVLEGGDLIGQAQTGTGKTAAFGIPL
IEKVTPGNRVQAIVLTPTRELAIQVAGELLRISKYKKVRTLPIYGGQSIGHQIRALRQGV
QVVVGTPGRVLDHLRRKTLKLDHVHTLVLDEADEMLDMGFIDDIETIINHLPEDRQTLLF
SATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFERNKVESLCRILDSEDVE
LGIIFCRTKRGVDELTEVLQARGYLADGLHGDLSQAQRDKVMNAFREGSIELLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREMRQMMFIQKQTKA
QLICRNVPSLEEVAERKQEQLREQLVNLLESDGVADMYLKVANSLIAQYPAEKIAAAALH
LAFHTEIGETDDTDAYNFGETGAAKGMVRFFLNVGRNVNVRPQDLVREISESVGIPGKAV
GRIDIFENFTFVEVPEDVAPFVYESLRQTRINGRRINLEPAKPRAKRS
NT seq 1587 nt   +upstreamnt  +downstreamnt
atgacgattttttctgattttcctttacataaatccattctgcaagccatttacgacatg
ggctttgaagagcccagcccgatccaggctgcctgcatcccgaaagtactggagggcggc
gacctgatcggtcaggcgcaaacaggtacgggtaaaaccgccgcgttcgggattccgctg
attgaaaaagtgacgccgggcaaccgcgtgcaggcgattgtgctcacgcccacccgcgaa
ctggccatccaagtggcaggcgagcttttgcgcatctccaaatacaaaaaggtgcggaca
ctgccgatctacggcggacagtccatcggccaccaaatccgtgcgctccgccagggtgtc
caggtcgtggtggggacccccggccgcgtgcttgaccacctgcgccgcaaaacgctgaag
ctggatcacgtacacacactggtcctggacgaagcggatgaaatgctggacatgggattc
atcgacgacattgaaaccattatcaaccacctcccggaagaccgtcagaccctgctgttc
tccgcgaccatgccgccggaaatcaaacgcctggcgacccgctacatgaaacagccgcag
acgatcgccgtcagccgcgaagaagtgaccgctccactgatcgagcaggtgtactacaag
gtatttgaacggaacaaggtggaaagcctctgccgcattctggacagcgaagacgtcgag
ctgggaatcatcttctgccgcactaagcggggcgtggacgagctgaccgaagtgctgcag
gcgcgcggctacctggccgacggtctgcacggcgacctgtcccaggctcagcgcgacaag
gtgatgaatgcgttccgcgagggttccatcgaactgttgatcgcgaccgacgtggcggcg
cgcggcattgacgtcggcaacgtctcccacgtcatcaactacgacattccgcaggattcg
gaaagctacgtgcaccggatcggccgtacgggccgcgccggccgcaaaggcattgccatg
acgctggtgacgccgcgcgagatgcgccagatgatgttcatccagaaacagaccaaagcc
caactgatctgccgcaacgtgccgtccctggaggaagtggcggaacgcaagcaggaacag
ctgcgggaacaactggtcaacctgctggagagcgatggagtggccgacatgtacctgaag
gtggccaactcgctcatcgctcagtacccggctgaaaaaatcgccgctgcagcgctgcac
ctagcgttccataccgagatcggcgagacggacgataccgacgcctacaacttcggggag
acgggtgccgccaagggaatggtgcgtttcttcctcaacgtgggccgcaatgtcaacgta
cgcccgcaggatttggtgcgggagatttccgagtccgtcggaatccccggaaaggctgtt
ggccgcatcgacatcttcgagaacttcaccttcgtggaagttcccgaagacgtggccccg
ttcgtctacgaatcgctgcgtcaaacgcgcatcaacggcagacggatcaatctggagccg
gcaaaaccgcgcgccaagcgttcctga

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