Brevibacillus sedimenti: IRT44_16060
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Entry
IRT44_16060 CDS
T07711
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ased
Brevibacillus sedimenti
Pathway
ased03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ased00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IRT44_16060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ased03019
]
IRT44_16060
03009 Ribosome biogenesis [BR:
ased03009
]
IRT44_16060
Enzymes [BR:
ased01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IRT44_16060
Messenger RNA biogenesis [BR:
ased03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IRT44_16060
Ribosome biogenesis [BR:
ased03009
]
Prokaryotic type
rRNA helicases
IRT44_16060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UFJ60757
LinkDB
All DBs
Position
complement(3287467..3289053)
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AA seq
528 aa
AA seq
DB search
MTIFSDFPLHKSILQAIYDMGFEEPSPIQAACIPKVLEGGDLIGQAQTGTGKTAAFGIPL
IEKVTPGNRVQAIVLTPTRELAIQVAGELLRISKYKKVRTLPIYGGQSIGHQIRALRQGV
QVVVGTPGRVLDHLRRKTLKLDHVHTLVLDEADEMLDMGFIDDIETIINHLPEDRQTLLF
SATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFERNKVESLCRILDSEDVE
LGIIFCRTKRGVDELTEVLQARGYLADGLHGDLSQAQRDKVMNAFREGSIELLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREMRQMMFIQKQTKA
QLICRNVPSLEEVAERKQEQLREQLVNLLESDGVADMYLKVANSLIAQYPAEKIAAAALH
LAFHTEIGETDDTDAYNFGETGAAKGMVRFFLNVGRNVNVRPQDLVREISESVGIPGKAV
GRIDIFENFTFVEVPEDVAPFVYESLRQTRINGRRINLEPAKPRAKRS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgacgattttttctgattttcctttacataaatccattctgcaagccatttacgacatg
ggctttgaagagcccagcccgatccaggctgcctgcatcccgaaagtactggagggcggc
gacctgatcggtcaggcgcaaacaggtacgggtaaaaccgccgcgttcgggattccgctg
attgaaaaagtgacgccgggcaaccgcgtgcaggcgattgtgctcacgcccacccgcgaa
ctggccatccaagtggcaggcgagcttttgcgcatctccaaatacaaaaaggtgcggaca
ctgccgatctacggcggacagtccatcggccaccaaatccgtgcgctccgccagggtgtc
caggtcgtggtggggacccccggccgcgtgcttgaccacctgcgccgcaaaacgctgaag
ctggatcacgtacacacactggtcctggacgaagcggatgaaatgctggacatgggattc
atcgacgacattgaaaccattatcaaccacctcccggaagaccgtcagaccctgctgttc
tccgcgaccatgccgccggaaatcaaacgcctggcgacccgctacatgaaacagccgcag
acgatcgccgtcagccgcgaagaagtgaccgctccactgatcgagcaggtgtactacaag
gtatttgaacggaacaaggtggaaagcctctgccgcattctggacagcgaagacgtcgag
ctgggaatcatcttctgccgcactaagcggggcgtggacgagctgaccgaagtgctgcag
gcgcgcggctacctggccgacggtctgcacggcgacctgtcccaggctcagcgcgacaag
gtgatgaatgcgttccgcgagggttccatcgaactgttgatcgcgaccgacgtggcggcg
cgcggcattgacgtcggcaacgtctcccacgtcatcaactacgacattccgcaggattcg
gaaagctacgtgcaccggatcggccgtacgggccgcgccggccgcaaaggcattgccatg
acgctggtgacgccgcgcgagatgcgccagatgatgttcatccagaaacagaccaaagcc
caactgatctgccgcaacgtgccgtccctggaggaagtggcggaacgcaagcaggaacag
ctgcgggaacaactggtcaacctgctggagagcgatggagtggccgacatgtacctgaag
gtggccaactcgctcatcgctcagtacccggctgaaaaaatcgccgctgcagcgctgcac
ctagcgttccataccgagatcggcgagacggacgataccgacgcctacaacttcggggag
acgggtgccgccaagggaatggtgcgtttcttcctcaacgtgggccgcaatgtcaacgta
cgcccgcaggatttggtgcgggagatttccgagtccgtcggaatccccggaaaggctgtt
ggccgcatcgacatcttcgagaacttcaccttcgtggaagttcccgaagacgtggccccg
ttcgtctacgaatcgctgcgtcaaacgcgcatcaacggcagacggatcaatctggagccg
gcaaaaccgcgcgccaagcgttcctga
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