Brevibacillus sedimenti: IRT44_16205
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Entry
IRT44_16205 CDS
T07711
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ased
Brevibacillus sedimenti
Pathway
ased03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ased00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IRT44_16205 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ased03019
]
IRT44_16205 (pnp)
03016 Transfer RNA biogenesis [BR:
ased03016
]
IRT44_16205 (pnp)
Enzymes [BR:
ased01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IRT44_16205 (pnp)
Messenger RNA biogenesis [BR:
ased03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IRT44_16205 (pnp)
Transfer RNA biogenesis [BR:
ased03016
]
Prokaryotic type
tRNA degradation factors
IRT44_16205 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
ATP-grasp
TetR_C_15
SPATA25
Motif
Other DBs
NCBI-ProteinID:
UFJ60784
LinkDB
All DBs
Position
complement(3318360..3320495)
Genome browser
AA seq
711 aa
AA seq
DB search
MEQQYRTYDFDLAGRKLTLEFGKMAKQAQGSVLVRYGDTAILSAVTVSKEAKPIDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVNTVLSV
DQDCSPEIAAMIGTSAALCVSEIPFNGPIAGVIVGRVDGQFVINPTVEQMEKSDIHLVVA
GTRDAINMVEAGADQVPEEVMLEAIMTGHEVIKELVAFQDQIVAEIGKEKMEVVLHEVDP
EIDQAVRSYAEARLKEAIRIEEKQARYDAIDAIKEETRQHFAELNPETYPEQEAMINEVL
HNIVKEEVRRLITEEKIRPDGRALNEIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLG
ALGDVQILDGLGLEESKRFMHHYNFPPYSVGEARPLRAPGRREIGHGALGERAIEPIIPS
ESEFPYTIRLVSEVIESNGSTSQASICASVLALMDAGVPIKAPVAGIAMGLIMGNDGKTF
SILTDIQGMEDHLGDMDFKVAGTEKGVTAIQMDIKISGINREILQQALEQAREGRLVILK
HMMETISAPRPQLSPYAPKIITMQINPDKIREVIGPQGRVINKIIDETGVKIDIEQDGRI
YIASVDQEANLRAKQIIEDLVREVTVGQTYLGTVKRVEKYGAFIELFAGKEGLCHISQLA
EERVAKTEDVVSIGDKVLVKVTEIDDQGRINLSRKAVLKEQAAQRAAAKAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacaataccgtacatacgactttgacctggcaggccgcaaactgacgctggaa
ttcggcaagatggccaagcaggcacaaggttcggttttggttcggtacggcgatacggcg
attctctccgctgtgacggtatccaaggaagcaaagccgattgactttttcccgctgacc
gtcaactacgaggagcgcctgtatgcagtcgggaaaattcccggagggtttatcaaacgg
gagggacgtcccagcgaaaaggcgattttggccagccgcctgattgaccgtccgattcgt
ccgttgttccccgaggggttccgcaatgaagtccaggtggtaaacacggtgctgtccgtt
gaccaggactgctcgccggagatcgctgcgatgatcggtacgtcggctgcgctgtgcgta
tcggaaattccgtttaacggccccattgccggcgtgatcgtcgggcgcgtagacggccag
ttcgtgatcaacccgaccgtcgaacagatggaaaagagcgacattcatctggtcgtggcc
ggtacgcgcgacgccatcaacatggtggaagcgggagccgaccaggtgccggaagaagtg
atgctggaagcgatcatgaccggtcacgaggtcatcaaggaactggtcgcattccaggat
cagatcgtcgccgagatcggcaaggaaaaaatggaagtcgtgctgcatgaagtggacccg
gagattgaccaggctgtccgcagctatgccgaagcccggttgaaggaagcgatccgcatc
gaggagaagcaggcgcgctacgacgcaattgacgcaattaaggaagaaacgcgtcagcac
tttgccgagctcaatccggagacgtatccggagcaggaagcgatgatcaacgaggtgctg
cacaacatcgtcaaggaagaagtgcgccgcctgatcaccgaggagaaaatccggccggat
ggacgggccctcaacgaaattcgtccgctgtccagcgaagtgggcctgctgcctcgcacg
cacggttccgggctgttcacacggggccaaacgcaagcgctcagcgtatgtacgctcggt
gcgctaggggatgtgcagatcctggacggattgggtctggaagagtccaaacgcttcatg
caccactacaatttcccgccgtacagtgtaggggaagcacgtccgttgcgggcaccggga
cgccgcgaaatcgggcacggagcgctgggcgagcgggcgatcgaaccgatcatcccgtct
gagagcgagttcccgtataccatccggcttgtttccgaggtgatcgaatccaacggttcc
acctcccaggcatcgatttgcgccagcgtgttggctctgatggatgcaggcgtgccgatc
aaggcgccggttgccggtatcgcgatggggctgatcatgggcaacgacggcaagaccttc
tccatcctgactgacatccagggcatggaagaccatctcggcgacatggacttcaaggtg
gccggtacggaaaaaggggttaccgccattcagatggacatcaagatttccggcatcaac
cgggagattctgcagcaggcgctggaacaggctcgcgaaggacggctcgtgattctcaag
cacatgatggaaacgatctccgcaccgcggccgcagctttctccatacgcgccgaagatt
atcacgatgcagatcaatccggacaagatccgcgaagtgatcggtccccaaggacgcgtc
atcaacaagatcatcgacgaaacgggcgtcaaaatcgacatcgaacaagatggtcgcatc
tacatcgcctcggtcgatcaggaagccaacctgcgtgcgaaacagatcatcgaagacctg
gttcgcgaggtaaccgttggccagacctatctgggcaccgtgaagcgcgtggaaaaatac
ggggcgttcatcgaactgtttgccggcaaggaaggtctctgccacatttcccaactggcg
gaagaacgggtcgccaagaccgaagatgtcgtctccatcggcgacaaagtgctcgtcaag
gttacggaaattgacgaccagggccggatcaacctgtcccgcaaggccgtgctgaaggaa
caggcggcacagcgtgcggctgctaaagcagaataa
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