Brevibacillus sedimenti: IRT44_16525
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Entry
IRT44_16525 CDS
T07711
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ased
Brevibacillus sedimenti
Brite
KEGG Orthology (KO) [BR:
ased00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ased03032
]
IRT44_16525 (topA)
03400 DNA repair and recombination proteins [BR:
ased03400
]
IRT44_16525 (topA)
Enzymes [BR:
ased01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IRT44_16525 (topA)
DNA replication proteins [BR:
ased03032
]
Prokaryotic type
DNA Topoisomerases
IRT44_16525 (topA)
DNA repair and recombination proteins [BR:
ased03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IRT44_16525 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UFJ60844
LinkDB
All DBs
Position
complement(3380430..3382508)
Genome browser
AA seq
692 aa
AA seq
DB search
MADTLVIVESPAKAKTIGKYLGSKYMVKASMGHVRDLPKSQMGVDVSKGFEPKYITIRGK
GDVLKTLKDAAKKVKKVYLAADPDREGEAIAWHLAQYLGLDMSQPLRVVFNEITKDAIKE
AFKHPRHINMDLVNAQQARRILDRLVGYNISPILWKKVRKGLSAGRVQTVTVKLIIDRER
EIQRFVPEEYWTISSTLLSNGKPFEAKFYGYGDEKRELKSEADVNAVLDRIQGQPYVVQK
VTKRERKRNPAPPFITSSLQQEAARKLNFRAAKTMRIAQELYEGIDLGGKEGTVGLITYM
RTDSTRVSVTAQEEAKAYIVEHFGADYVPAEPRAQVKKENAQDAHEAIRPTSVMRTPDQL
KDVLSRDQLRLYRLIWERFLASQMASAVLDTMSVDIAAGEVTFRATGSKVKFPGFMKVYI
EGSDDGKEEETFLPPIEEGQTLELKEIEPTQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTLDTIQKRGYVALEEKRFVPTELGEIVISLIEEFFPEILDVEFTAHMESDLDNIEEGI
VDWVKVLDAFYQDFSKRLAVAEEQMEQVELKDEESDETCELCGRVMVYKLGRFGKFLACS
GFPECRNTKPIVKELGIPCPQCETGSIIERKSKRNRIFYGCNRYPECDFVSWDKPIARPC
PKCGGMLVEKKRKKQGVSIVCTKCDYQEEADS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacacgcttgtgattgtcgaatccccagcaaaagcaaaaacgattggaaaatat
ctgggaagcaaatatatggtgaaagcgtccatgggccatgtgcgcgacctcccaaaaagc
caaatgggtgttgacgtatcgaaaggatttgaaccgaaatacataaccattcgcggcaag
ggggatgtgctgaaaacccttaaggacgccgccaagaaagtaaaaaaggtatacctggcg
gcggacccggaccgcgaaggggaggcgattgcctggcacttggcgcagtatctcgggttg
gacatgagccagccgctgcgcgtggtgttcaacgagattaccaaagacgccatcaaggag
gcgttcaaacacccacgtcacatcaacatggacctggtgaacgcccagcaggcgcggcga
atcctggaccgcctggtcggctacaacatcagcccgatcttgtggaaaaaggtgcgcaaa
gggctgagtgccgggcgcgttcagacggtgacggtcaagctgatcattgaccgcgagcgg
gaaatccagcggtttgtgccggaggagtactggacgatcagcagtacgctcttgagcaac
ggcaagccgtttgaggccaaattctacggatacggcgacgaaaaaagggagctgaagtca
gaggcggacgtcaatgcggtgctggaccgcattcagggacagccgtacgtggtgcagaag
gtgaccaaacgggagcgcaagcgcaatcccgcaccaccgtttatcaccagctcgctgcag
caggaagcggcacgcaagctgaacttccgggcggccaagacgatgcggattgcgcaggag
ctctatgaagggattgatctgggcggcaaggaaggaacggtcggtctgatcacctacatg
cgtaccgactccacgcgcgtttccgtgacggcccaagaggaagccaaagcctacatcgtg
gaacacttcggggctgattacgtcccggccgagccgcgtgcccaggtgaaaaaggaaaat
gcccaggatgcccacgaagcgattcgcccgacgtcggtcatgcgcacgccggaccagctc
aaggatgtgctgagccgcgaccagcttcgcctgtaccggctgatctgggagcgcttcctt
gccagtcagatggcgtctgctgtgctggacacgatgagcgtggacatcgcggcaggtgaa
gtgacgttccgggcgaccggttccaaggtaaagttccccggcttcatgaaggtatatatt
gaaggaagcgacgacggcaaggaagaggaaacattcctgccgccgattgaagagggacag
acgctggaattgaaggaaatcgaaccgacccagcactttacgcagccgccgccccgctac
accgaggcgcggctggtcaagacgctggaggaactggggattggacgcccctccacttat
gcgccgacattggacacgatccagaaacggggctacgtggctctggaggagaagcggttc
gtcccgaccgaactgggggagatcgtcatttccctgatcgaagagttcttccccgaaatc
ctggatgtggagtttaccgcccacatggaatccgacctggacaacatcgaggaagggatt
gtcgattgggtgaaggtgctcgacgccttctaccaggatttttccaagcggctcgccgtt
gccgaggagcagatggaacaagtagagctgaaggacgaagaatccgacgagacgtgcgaa
ctgtgcggccgggtgatggtgtacaaactggggcgtttcgggaagtttctcgcctgctcc
ggatttcccgaatgccgcaacaccaaaccgatcgtcaaggaactcggcatcccctgcccg
cagtgtgaaaccggatcgatcattgaacgtaaatctaagaggaaccgtattttttacgga
tgcaaccgttatccggaatgcgattttgtttcctgggacaaaccaattgcgcgtccttgt
ccgaagtgcggcgggatgctcgtcgaaaagaaacggaaaaagcagggcgtcagcattgtc
tgcaccaaatgcgattaccaggaagaagccgattcctga
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