Aggregatibacter segnis: NCTC10977_00213
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Entry
NCTC10977_00213 CDS
T06075
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aseg
Aggregatibacter segnis
Brite
KEGG Orthology (KO) [BR:
aseg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aseg03009
]
NCTC10977_00213 (rlmD)
Enzymes [BR:
aseg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC10977_00213 (rlmD)
Ribosome biogenesis [BR:
aseg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC10977_00213 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
PCMT
TRAM
Cons_hypoth95
Methyltransf_25
RrnaAD
MTS
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_11
Methyltransf_4
Ubie_methyltran
TRM5-TYW2_MTfase
DOT1
Methyltransf_15
Ribosomal_L22
PDGF
Motif
Other DBs
NCBI-ProteinID:
SQH63722
LinkDB
All DBs
Position
1:213585..214901
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AA seq
438 aa
AA seq
DB search
MALLYSDNKPKKKTANFTAHILDLDYQGLGVAKINGKTWFIENALPQESVEVRVLEEKRQ
YGQGVAQRILRPSPQRQTPPCVYFEQCGGCQNQHIPIELQRSAKQTALVQRLSRLQPVPI
HFMPLLQGEPWHYRRRVRLSVLLDSKNRKLNIGLRRKNSQQIIPIEHCLVLEQPLNDLLP
KLTALFSQWSMPQQLGHIELVAADNGIAMLLRHIKNVGETDRTLLLRFAEQHQLMLFVQE
HDSIEHWYGEQPYYRLGDDITLQFDIRDFIQINAQLNRQMIATALDWLELNPQDHVLDLF
CGMGNFTLPLSRKVKSAVGIEGVSAMVEKARANAERNGCHNVQFYRTDLDKPFISQAWAQ
QPFNKILLDPPRTGAAFALNALCQLQAESILYVSCNPATLVRDTEILRDAGYQLDKVAMI
DMFPQTGHLESISLFRKR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcattactttacagcgacaacaaaccaaagaaaaagaccgcaaatttcaccgcacac
attcttgatttagattatcaaggcttaggtgtggctaaaatcaacggcaaaacctggttt
attgaaaacgcgttgccgcaagaaagcgtagaggttcgcgtattggaagaaaaacgccaa
tacggtcaaggcgtagcgcagcgtattttacgcccaagtcctcagcgccaaacaccgcca
tgcgtttattttgaacaatgcgggggatgccaaaatcaacacattcctattgaattacaa
cgttctgccaagcaaaccgcattggttcaacgcttatcccgtttacagccggtgcctatt
catttcatgccgttattgcaaggcgaaccttggcattaccgccgtcgggtacgcttaagt
gtgttgttggacagtaaaaatcgtaaactgaatatcggcttacggcgtaaaaattcacag
caaattattccgattgaacattgtttggtgttggaacagccgctgaatgatttattgccc
aaactgaccgcacttttctcgcaatggtcaatgccacaacagctggggcatattgaactt
gttgcggcagacaatggcatcgccatgttattacgccatataaaaaacgtcggtgaaacc
gaccgcactttattattacggtttgccgaacaacaccaactcatgttatttgtacaagaa
catgacagcattgaacattggtatggcgaacagccttattaccgtttgggcgatgacatc
acgttgcaatttgatattcgcgatttcattcaaattaatgcacaattaaaccgtcaaatg
atcgcaacagcgttagactggttggagcttaatccacaggatcatgtgttagatttgttc
tgtggtatgggcaacttcaccttaccgctaagtcgcaaagtaaaaagtgcggtaggaatt
gaaggtgtttctgcgatggtggaaaaagcccgcgccaatgccgaacgaaacggttgtcat
aatgtccaattttaccggactgatttggataaaccctttatcagtcaagcgtgggcgcag
caacccttcaataaaattttgctcgacccaccacgcacaggcgcggcatttgctttaaat
gcactctgtcagttacaggctgaaagcattctgtatgtttcttgcaatcctgcaacactc
gtgcgagatacggaaatcttgcgtgacgcaggctaccaattggataaagtcgccatgatc
gatatgttcccgcaaaccggtcatttggagtcgataagtttatttcgaaaaagataa
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