Aggregatibacter segnis: NCTC10977_00498
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Entry
NCTC10977_00498 CDS
T06075
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
aseg
Aggregatibacter segnis
Brite
KEGG Orthology (KO) [BR:
aseg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aseg03009
]
NCTC10977_00498 (srmB)
Enzymes [BR:
aseg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10977_00498 (srmB)
Ribosome biogenesis [BR:
aseg03009
]
Prokaryotic type
rRNA helicases
NCTC10977_00498 (srmB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrA_inter
Cas3-like_C_2
WSD
Motif
Other DBs
NCBI-ProteinID:
SQH63991
LinkDB
All DBs
Position
1:complement(487329..488657)
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AA seq
442 aa
AA seq
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MTNLTQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFL
LPAIQHLLDYPRRKPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNH
GEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETR
WRKQTLLFSATLEGDLLEDFADRTLNEPVKIDAEPSRRERKKIQQWYYHADSNEHKFKLL
ARFIEQEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVV
TVLVSTDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRL
LGKIKRYTQEILKARVIEGLEPRTKAPKDGEIKTVSKKQKEKKLEKREAQKKADKKAKQR
HQDRKNIGKRRKPSASTTETAQ
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacctcactcaatttgcagattttgatctcgcgcctgaattactcaacgccctc
cagaaaaaaggctaccaacgtcctaccgccatccaacaggaaaccattcctgccgcgatg
gagggctttgatgtcctcgggtcggcaccgaccggcactggaaaaaccgccgcgtttttg
ctaccggcgattcaacatttgttggattatccacgccgtaaaccgggcgcgccgcgtgtg
ttgattcttacaccaacccgtgaacttgccatgcaggtagcggaacaggcggaagaactt
gcctgctttaccaaactcagcattgcgaccatcaccggtggtgtggcgtatcaaaatcac
ggcgagattttcaataaaaatcaagacattgttgtggcgaccccggggcgtttgttgcaa
tacattaaagaagaaaattttgattgccgcgcggtagaaattctgatttttgacgaagcg
gacagaatgttgcaaatgggctttgggcaagatgcggagaaaatctcggcagaaacccgt
tggcgtaagcaaacgttgttattctcggcgacccttgaaggggatttattggaagatttt
gccgaccgcacgttaaacgagccggtgaaaattgatgcagaaccgagccgacgtgagcgg
aagaaaattcagcagtggtattatcacgccgacagtaatgagcataaattcaaattatta
gcgcgtttcattgagcaagagcaagtgagcaaaggcattgtattcgtacgccgtcgggaa
gatgtacgcgaactggcggaaaatttgcgcaaacgcggtattcgcagcacctatctggaa
ggtgaaatggcgcaaacccaacgcaataatgccatcgataaactgaaaaacggcgtggtg
acggtgttggtctccacggatgtctccgcacgcggtatcgatattgatgatgttagccac
attatgaattttgatttaccgtacagcgccgatacttatttgcaccgcatcgggcgtacc
gcgcgtgccggcaaaaaaggcaccgccgtgtctttcgtggaagcacacgattatcgtctg
ctgggcaaaattaagcgttatacccaagaaattctgaaagcacgtgtgattgaaggtttg
gaaccgcgcaccaaagcgccgaaagacggcgaaatcaaaaccgtcagcaaaaaacaaaaa
gagaagaaattagaaaaacgcgaagcacaaaaaaaagcagataaaaaagccaaacagcgc
caccaagatcgtaaaaatatcggcaaacgccgtaaaccaagtgcttcaacaacagaaacc
gcccaataa
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