Aggregatibacter segnis: NCTC10977_01927
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Entry
NCTC10977_01927 CDS
T06075
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aseg
Aggregatibacter segnis
Pathway
aseg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aseg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10977_01927 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aseg03019
]
NCTC10977_01927 (rne)
03009 Ribosome biogenesis [BR:
aseg03009
]
NCTC10977_01927 (rne)
Enzymes [BR:
aseg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC10977_01927 (rne)
Messenger RNA biogenesis [BR:
aseg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10977_01927 (rne)
Ribosome biogenesis [BR:
aseg03009
]
Prokaryotic type
rRNA processing factors
NCTC10977_01927 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
RecD_N
Motif
Other DBs
NCBI-ProteinID:
SQH65347
LinkDB
All DBs
Position
1:1974064..1976922
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AA seq
952 aa
AA seq
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MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPADYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKA
KAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSL
SILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHDVDIIVVPNEAMETP
NFSVFRVRDGEEVNELSYNLAKLHQDQDETFAAEESLVSRNIEATPAETPAVESAAVSLA
ITMPAPEPVERKVPKAPSLLSRLFAALKGLFASEPKQEEKNKKSRSNNRNGNNRNRRNQD
RRNNRRVRNENVENIIEEQSADKSEVRNRHQDRNAKRNRKPEVIEEIIKPESSTPVTEEK
AEPAQRRQRRDLRKKVRVYEETNELPVSQTENISFAENTHVVRDAEEAVTSAEVVEMPNE
TERSRDNSRQRRLPRHLRVNNQRRRRNQQEKSPMPLFAAVASPELASGKVWIDMMQVNQP
KETPFLSVDELLEQQNQSTAETEKSITVPALDMIVEKSKNEVQPLTEFITQPANESVEKK
IQASLERLNNNVTSEPTAAIAEQLEPKAEHDVKFMAEIDRTYVFNGRVGTFSAVAHTKAE
ATLAKSSDEPITIYPVQEWQESRYYFYGKGAAGHHTAISHVYAEPTKAESEN
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgcgttgcgttagtcgat
ggacaacgcttattcgacctggacattgaaagtcctggtcacgaacagaaaaaagccaat
atttacaaaggaaaaatcactcgcgttgagccgagtttagaagccgcttttgtggattat
ggcgcagaacgtcacggttttttaccgttaaaagaaattgcacgtgaatatttcccggcg
gattatgtctatcaaggtcgcccaaatattcgtgatattatttctgaaggacaagaagtt
attgttcaagtgaacaaagaagagcgcggcaataaaggtgctgcgttgacaacctttgtt
tccttagcgggaagttatttggtgatcatgccaaacaacccccgtgcggggggcatttct
cgtcgcattgagggtgatgagcgtttggaattaaaagatgccttgagttctttggatgtg
cctgaaggtgtcggtttaatcgtgcgtaccgccggtgtaggtaaatcaccggaagaattg
caatgggacttaaaagtgctattgcaccattgggaggcgatcaaacaagcctcagaaagc
cgccctgcgccgttcttaattcaccaagaaagtgatgttatcgtgcgtgcgattcgcgac
tatttgcgtcgtgatatcggcgaaattctgattgatagcccgaaagtctatgaaaaagcg
aaagcacacatcaaattagtgcgtccggatttcattaatcgagtgaaattgtatcaaggc
gaagttccgctgttcagtcattatcaaatcgaatcccaaattgaatccgctttccaacgt
gaagtgcgtttaccttccggtggctctatcgtcattgacgccactgaagccttaaccgcc
attgatattaactccgcacgttctacccgtggtggcgatatcgaagaaaccgcattaaac
actaaccttgaagccgcagatgaaattgcgcgtcaacttcgtttacgcgacttgggtggt
ttgatcgttatcgacttcatcgacatgacaccggttcgccatcaacgtgaagtggaaaac
cgcattcgcgatgccgtacgtcaagatcgcgcgcgtattcaaattagtcgtatttcccgc
ttcggtttgttggaaatgtcacgccaacgtttgagtccgtcattaggtgaatcctctcat
cacgtctgcccgcgttgccaagggaccggtaaaatccgtgataacgaatcactttcactg
tctatcttgcgtttattggaagaagaagcattaaaagaaaataccaaacaggttcacacc
atcgttccggtacaaatcgcttcttacttattaaacgaaaaacgtaaagccattcatagc
atcgaaaaacgccatgatgtcgatattatcgtggtaccaaacgaagcgatggaaaccccg
aatttcagcgtgttccgtgttcgtgatggcgaagaagtgaatgagttaagctacaattta
gcaaaattacatcaagatcaagatgaaacctttgccgctgaggaatcgttggtttctcgt
aatattgaagcgacaccggcagaaacaccggcggtggaaagtgcggcggtttctttggcc
attacaatgcctgcaccggagccggttgaacgtaaagtgccgaaagcaccttctttgtta
agccgtttattcgccgcgttaaaaggtttatttgcttctgagccaaaacaggaagagaaa
aataaaaaatctcgttcgaataacagaaacggtaataaccgtaatcgccgcaatcaagat
cgtcgcaacaatcgtcgtgttcgtaacgaaaacgtggaaaacattattgaagaacaaagt
gcggataaatctgaagtgagaaatcgtcaccaagatcgcaacgctaaacgtaatcgtaaa
cctgaggtgattgaagaaatcattaaacctgaatcttctaccccggttaccgaagaaaag
gctgaacctgcacaacgtcgtcaacgtcgcgacttacgcaaaaaagtccgtgtttatgag
gaaacaaatgagcttccggtttctcaaacagaaaacatttcctttgctgaaaatacacat
gttgtgcgcgatgccgaagaagctgttacgtcagcagaagtagttgaaatgccaaacgaa
actgaacgcagtcgtgataattcccgtcaacgtcgtttaccacgccatttacgcgtgaat
aatcaacgccgtcgtcgcaaccaacaggaaaaatcaccaatgccattatttgctgcggtc
gcttctcctgagttagccagcggtaaagtttggatcgatatgatgcaagtaaatcaacca
aaagaaacaccgttcttatctgttgatgaattgcttgaacaacaaaatcaatcaactgca
gaaaccgagaaaagcattacggttccggcattagatatgattgttgagaaatcaaaaaat
gaagttcagccgttaactgaatttattacccaaccggcaaatgagtctgttgagaaaaaa
attcaggcgtctttagaacgtttaaacaataacgtgacgtcagaaccaactgcggcaatc
gcagaacagcttgaaccgaaagccgagcatgatgtgaaatttatggccgaaattgaccgc
acttatgtgttcaatggccgtgttggaactttctctgcggtagctcatactaaagcggaa
gcgacattagcgaaatcctcggatgagccaatcacaatatatccggtgcaagaatggcaa
gaatcccgctattatttctacgggaaaggcgctgcaggacatcatacggcaatcagccat
gtctacgcagaaccaacaaaagccgagtctgaaaactag
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