Aggregatibacter segnis: NCTC10977_01929
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Entry
NCTC10977_01929 CDS
T06075
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aseg
Aggregatibacter segnis
Pathway
aseg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aseg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10977_01929 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aseg03400
]
NCTC10977_01929 (mfd)
Enzymes [BR:
aseg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10977_01929 (mfd)
DNA repair and recombination proteins [BR:
aseg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10977_01929 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
SecA_DEAD
RecG_dom3_C
BioW
Motif
Other DBs
NCBI-ProteinID:
SQH65348
LinkDB
All DBs
Position
1:complement(1977249..1980698)
Genome browser
AA seq
1149 aa
AA seq
DB search
MQTPFFHIEIPTQAQDHKILANILPGADSLAVSEIAAQFNGLTVVVTNDTRSAVRLEKEL
AQLSPLNVTFFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPIATLMQRVCP
PSYLQHRVLLINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDSIRIFDVDTQRTLQEIDQINLLPAHEFPTDNQGIEFFRSQFRAAFGEIR
RDPEHIYQQISKGTLAAGIEYWQPLFFEKMATLFDYFPANTLFITGEQNQTQGERFYADA
EQRFESRRVDPMRPLLSPDKLWLRIDEVNRQLKNYPAIALKTEKVRSSARQKNLAITPLP
PLTIQSQQKEPLHQLRQFIEHFKGNILFMVETEGRRETLLSLLSPLKLKPKQIHSLAQAT
EEKFALMVSPLEHGFIIEQDVPLAIICEAELLGERVQQRQWDKSRTVNPDTLIRNLAELQ
IGQPVVHLDHGVGRYGGLVSLENGGIKAEYLLLNYANDSKLYVPVASLHLISRYVGGADE
TAPLHKLGSEAWGRARSKAAEKIRDVAAELLDVYAQREAQKGFAFQYDREEFQQFTATFP
FEETHDQLMAINAVISDMTLPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPT
TLLAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKQVIQDLADGKVDILIGTHKIIQGDV
QFHDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLTIKTFVRQTDELVIREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKLMTKDAKKRLEALESLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIESIGFSLYMELLERAVKALKEGREPSLDELTQQQTEIDLRMPSLLPEDYLG
DVNMRLSFYKRIAGAENTEALDELKVELIDRFGTLPQATRNMLQIAQLRLDLKPLNVIRL
DAYAQGGFIEFAPSADLDPMIFLQLIQSNPAVYRFDGPHKFRFTKDLTDYKVRLEFVTDL
VKELIKKEG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactccattttttcacatcgaaattccaacccaagcacaagatcataaaatttta
gccaatattctgcccggcgcggatagccttgccgtgagtgaaattgcggcgcagtttaat
gggctaaccgtcgtggtgacgaacgacacccgaagtgcggtgcgtttagaaaaagaatta
gcgcaactgagcccacttaatgtcaccttttttcccgattgggaaaccttgccttacgac
agtttttcgcctcatcaagatattatttcagcacgcttgagtgctttatttcacttacaa
caacgcaaacaaggcattttcattttgccgattgccaccttaatgcaacgcgtttgcccg
ccctcttatttacaacatcgggtgttactgattaacaaaggagaccgttttgtcattgaa
acacttcgtttgcaattggaaaaatcgggttatcgcgcggtggagcaagtgttggagcat
ggtgaatatgcagtgcgtggtgccttgttggatcttttcccaatgggaagtgcggtgcct
tttcgcttagatttctttgatgatgaaattgattccattcgcatttttgacgtggataca
caacgcacgttgcaggaaatcgatcaaatcaatttattaccagcgcacgaatttccaacc
gataaccaaggtattgaattttttcgtagccaattccgcgcagcgtttggtgaaattcga
cgggatccggaacatatttatcaacaaatcagcaaaggcacgttggcggcagggattgaa
tattggcagcctttattctttgaaaaaatggcgaccttatttgattatttcccggcgaat
acgttgtttattaccggtgagcagaatcaaacgcagggcgaacgtttttacgcggatgca
gaacagcgttttgagagccgccgcgtcgatccgatgcgtccgttattgtcgcccgataaa
ctttggttgcgcattgacgaagtgaatcgtcagttaaaaaattaccctgccattgcgtta
aaaacggaaaaagtgcggtcgtccgcacggcagaaaaatttggccattacgcccttaccg
ccactgaccattcaatcgcaacaaaaagaaccgttacatcagttacgccaatttattgag
cattttaaaggcaatattttatttatggtggaaacggaaggtcgccgtgaaaccttgtta
agcctgctttctccgctaaaactgaaaccaaaacagattcatagcttggcacaagcgaca
gaagaaaaatttgctttaatggttagcccgttggagcatggttttattattgagcaggat
gtgccgcttgccattatttgtgaagcggaattgcttggcgaacgcgtgcaacaacggcag
tgggataaatcccgcacggtgaaccctgataccttgattcgtaaccttgccgaattgcaa
atcggtcagccggtcgtgcatttggatcatggcgtggggcgctacggcggtttagtgagt
ttagaaaacggtggcattaaagcggaatatttgttgctcaattatgccaacgactcaaaa
ttgtatgtgccggtggcatcgttacatttaatcagccgttatgtgggcggtgccgatgag
accgcgccgttgcacaagttaggctccgaagcctggggcagagcgcgcagtaaagcggcg
gagaaaattcgtgatgtggcagcagagttattggatgtgtatgcgcaacgtgaagcgcaa
aaaggctttgcgttccaatatgatcgtgaggaattccaacaattcaccgccacgttccca
tttgaagaaacccatgaccaacttatggcaattaatgctgtgatttccgacatgacattg
ccgaaagccatggaccgtttggtatgtggagatgtgggttttggtaaaacggaagtggcg
atgcgtgccgcctttttagcggtgatgaaccacaaacaggttgcagtgttggtgccgacc
accttgttggcgcaacaacatttcgataatttcaaagaccgcttcgccaatttgccggtg
aacgtggaaatgttgtcccgctttaaaacggcgaaagagcagaaacaggtgattcaggat
ttagccgacggtaaagtggatattctgattggcacccataaaattattcaaggtgatgtg
caattccatgatctgggtttgttgattattgacgaagaacaccgttttggcgtgcgccaa
aaagaaaaaatgaaacagctgcgcgcgaacattgatattctcaccctgaccgcaacaccg
attccacgtacgttaaatatggcgatgaatggcattcgcgatctttccattatttctacg
ccaccggcacgccgtttaaccattaaaacgtttgtgcgtcaaacggatgagttggtgatt
cgtgaagccattttgcgtgaaattttgcgtggtgggcaggtgtattatttgcataacgat
gtagcgagcattgaaaatacagcagaaaaactgaccgcacttgtaccggaagcgcgcgtg
attgtgggacatgggcaaatgcgcgaacgtgaattggaacgcgtgatgtcggatttttat
catcaacgttataacgtgttggtgtgttctacgattattgaaaccggtatcgatgtgccg
acggccaataccattattatcgagcgtgccgacaatttcggtctggcacagttgcatcag
ttgcgcggacgggttgggcgttctcaccatcaagcctatgcttatttgctcacaccgcca
ccaaaactgatgacgaaggatgcgaaaaaacgcttggaagccctggaaagcctagataac
ctcggtgccggctttattttagccacccacgatttagaaattcgcggcgcaggggaattg
ctaggcaacgagcagagcggacaaattgaaagtatcggtttttctctttacatggaatta
ttggaacgtgcggtgaaagccttaaaagaagggcgcgagccgtcattggacgaactgacg
caacaacaaactgagattgatttacggatgccatcgctattgccggaagattatttgggc
gatgtgaatatgcgtttgtctttttataaacgcattgccggtgcggaaaacaccgaagca
ttggatgaattaaaagtggagcttatcgaccgtttcggaaccttgccacaagccacgcgg
aatatgttacaaattgcccaattacgactggatttaaaaccgctcaatgtcattcgcttg
gatgcctacgcgcaaggcggattcatcgaatttgccccaagtgctgatttagacccgatg
atctttttacagctaattcaaagcaatccagcggtttatcgttttgacggcccacataaa
tttcgctttaccaaagatttaacggattacaaagtgcggttagaatttgtgacggatttg
gtcaaagaattaattaagaaagaagggtga
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