KEGG   Aggregatibacter segnis: NCTC10977_01929
Entry
NCTC10977_01929   CDS       T06075                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
aseg  Aggregatibacter segnis
Pathway
aseg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aseg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NCTC10977_01929 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aseg03400]
    NCTC10977_01929 (mfd)
Enzymes [BR:aseg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NCTC10977_01929 (mfd)
DNA repair and recombination proteins [BR:aseg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      NCTC10977_01929 (mfd)
SSDB
Motif
Pfam: MFD_D3 DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII ERCC3_RAD25_C UB2H SecA_DEAD RecG_dom3_C BioW
Other DBs
NCBI-ProteinID: SQH65348
LinkDB
Position
1:complement(1977249..1980698)
AA seq 1149 aa
MQTPFFHIEIPTQAQDHKILANILPGADSLAVSEIAAQFNGLTVVVTNDTRSAVRLEKEL
AQLSPLNVTFFPDWETLPYDSFSPHQDIISARLSALFHLQQRKQGIFILPIATLMQRVCP
PSYLQHRVLLINKGDRFVIETLRLQLEKSGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDSIRIFDVDTQRTLQEIDQINLLPAHEFPTDNQGIEFFRSQFRAAFGEIR
RDPEHIYQQISKGTLAAGIEYWQPLFFEKMATLFDYFPANTLFITGEQNQTQGERFYADA
EQRFESRRVDPMRPLLSPDKLWLRIDEVNRQLKNYPAIALKTEKVRSSARQKNLAITPLP
PLTIQSQQKEPLHQLRQFIEHFKGNILFMVETEGRRETLLSLLSPLKLKPKQIHSLAQAT
EEKFALMVSPLEHGFIIEQDVPLAIICEAELLGERVQQRQWDKSRTVNPDTLIRNLAELQ
IGQPVVHLDHGVGRYGGLVSLENGGIKAEYLLLNYANDSKLYVPVASLHLISRYVGGADE
TAPLHKLGSEAWGRARSKAAEKIRDVAAELLDVYAQREAQKGFAFQYDREEFQQFTATFP
FEETHDQLMAINAVISDMTLPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPT
TLLAQQHFDNFKDRFANLPVNVEMLSRFKTAKEQKQVIQDLADGKVDILIGTHKIIQGDV
QFHDLGLLIIDEEHRFGVRQKEKMKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLTIKTFVRQTDELVIREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKLMTKDAKKRLEALESLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIESIGFSLYMELLERAVKALKEGREPSLDELTQQQTEIDLRMPSLLPEDYLG
DVNMRLSFYKRIAGAENTEALDELKVELIDRFGTLPQATRNMLQIAQLRLDLKPLNVIRL
DAYAQGGFIEFAPSADLDPMIFLQLIQSNPAVYRFDGPHKFRFTKDLTDYKVRLEFVTDL
VKELIKKEG
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgcaaactccattttttcacatcgaaattccaacccaagcacaagatcataaaatttta
gccaatattctgcccggcgcggatagccttgccgtgagtgaaattgcggcgcagtttaat
gggctaaccgtcgtggtgacgaacgacacccgaagtgcggtgcgtttagaaaaagaatta
gcgcaactgagcccacttaatgtcaccttttttcccgattgggaaaccttgccttacgac
agtttttcgcctcatcaagatattatttcagcacgcttgagtgctttatttcacttacaa
caacgcaaacaaggcattttcattttgccgattgccaccttaatgcaacgcgtttgcccg
ccctcttatttacaacatcgggtgttactgattaacaaaggagaccgttttgtcattgaa
acacttcgtttgcaattggaaaaatcgggttatcgcgcggtggagcaagtgttggagcat
ggtgaatatgcagtgcgtggtgccttgttggatcttttcccaatgggaagtgcggtgcct
tttcgcttagatttctttgatgatgaaattgattccattcgcatttttgacgtggataca
caacgcacgttgcaggaaatcgatcaaatcaatttattaccagcgcacgaatttccaacc
gataaccaaggtattgaattttttcgtagccaattccgcgcagcgtttggtgaaattcga
cgggatccggaacatatttatcaacaaatcagcaaaggcacgttggcggcagggattgaa
tattggcagcctttattctttgaaaaaatggcgaccttatttgattatttcccggcgaat
acgttgtttattaccggtgagcagaatcaaacgcagggcgaacgtttttacgcggatgca
gaacagcgttttgagagccgccgcgtcgatccgatgcgtccgttattgtcgcccgataaa
ctttggttgcgcattgacgaagtgaatcgtcagttaaaaaattaccctgccattgcgtta
aaaacggaaaaagtgcggtcgtccgcacggcagaaaaatttggccattacgcccttaccg
ccactgaccattcaatcgcaacaaaaagaaccgttacatcagttacgccaatttattgag
cattttaaaggcaatattttatttatggtggaaacggaaggtcgccgtgaaaccttgtta
agcctgctttctccgctaaaactgaaaccaaaacagattcatagcttggcacaagcgaca
gaagaaaaatttgctttaatggttagcccgttggagcatggttttattattgagcaggat
gtgccgcttgccattatttgtgaagcggaattgcttggcgaacgcgtgcaacaacggcag
tgggataaatcccgcacggtgaaccctgataccttgattcgtaaccttgccgaattgcaa
atcggtcagccggtcgtgcatttggatcatggcgtggggcgctacggcggtttagtgagt
ttagaaaacggtggcattaaagcggaatatttgttgctcaattatgccaacgactcaaaa
ttgtatgtgccggtggcatcgttacatttaatcagccgttatgtgggcggtgccgatgag
accgcgccgttgcacaagttaggctccgaagcctggggcagagcgcgcagtaaagcggcg
gagaaaattcgtgatgtggcagcagagttattggatgtgtatgcgcaacgtgaagcgcaa
aaaggctttgcgttccaatatgatcgtgaggaattccaacaattcaccgccacgttccca
tttgaagaaacccatgaccaacttatggcaattaatgctgtgatttccgacatgacattg
ccgaaagccatggaccgtttggtatgtggagatgtgggttttggtaaaacggaagtggcg
atgcgtgccgcctttttagcggtgatgaaccacaaacaggttgcagtgttggtgccgacc
accttgttggcgcaacaacatttcgataatttcaaagaccgcttcgccaatttgccggtg
aacgtggaaatgttgtcccgctttaaaacggcgaaagagcagaaacaggtgattcaggat
ttagccgacggtaaagtggatattctgattggcacccataaaattattcaaggtgatgtg
caattccatgatctgggtttgttgattattgacgaagaacaccgttttggcgtgcgccaa
aaagaaaaaatgaaacagctgcgcgcgaacattgatattctcaccctgaccgcaacaccg
attccacgtacgttaaatatggcgatgaatggcattcgcgatctttccattatttctacg
ccaccggcacgccgtttaaccattaaaacgtttgtgcgtcaaacggatgagttggtgatt
cgtgaagccattttgcgtgaaattttgcgtggtgggcaggtgtattatttgcataacgat
gtagcgagcattgaaaatacagcagaaaaactgaccgcacttgtaccggaagcgcgcgtg
attgtgggacatgggcaaatgcgcgaacgtgaattggaacgcgtgatgtcggatttttat
catcaacgttataacgtgttggtgtgttctacgattattgaaaccggtatcgatgtgccg
acggccaataccattattatcgagcgtgccgacaatttcggtctggcacagttgcatcag
ttgcgcggacgggttgggcgttctcaccatcaagcctatgcttatttgctcacaccgcca
ccaaaactgatgacgaaggatgcgaaaaaacgcttggaagccctggaaagcctagataac
ctcggtgccggctttattttagccacccacgatttagaaattcgcggcgcaggggaattg
ctaggcaacgagcagagcggacaaattgaaagtatcggtttttctctttacatggaatta
ttggaacgtgcggtgaaagccttaaaagaagggcgcgagccgtcattggacgaactgacg
caacaacaaactgagattgatttacggatgccatcgctattgccggaagattatttgggc
gatgtgaatatgcgtttgtctttttataaacgcattgccggtgcggaaaacaccgaagca
ttggatgaattaaaagtggagcttatcgaccgtttcggaaccttgccacaagccacgcgg
aatatgttacaaattgcccaattacgactggatttaaaaccgctcaatgtcattcgcttg
gatgcctacgcgcaaggcggattcatcgaatttgccccaagtgctgatttagacccgatg
atctttttacagctaattcaaagcaatccagcggtttatcgttttgacggcccacataaa
tttcgctttaccaaagatttaacggattacaaagtgcggttagaatttgtgacggatttg
gtcaaagaattaattaagaaagaagggtga

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