Aggregatibacter segnis: NCTC10977_01948
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Entry
NCTC10977_01948 CDS
T06075
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aseg
Aggregatibacter segnis
Pathway
aseg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aseg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10977_01948 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aseg03019
]
NCTC10977_01948 (deaD)
03009 Ribosome biogenesis [BR:
aseg03009
]
NCTC10977_01948 (deaD)
Enzymes [BR:
aseg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10977_01948 (deaD)
Messenger RNA biogenesis [BR:
aseg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10977_01948 (deaD)
Ribosome biogenesis [BR:
aseg03009
]
Prokaryotic type
rRNA helicases
NCTC10977_01948 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
SQH65367
LinkDB
All DBs
Position
1:complement(2000980..2002782)
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AA seq
600 aa
AA seq
DB search
MTETKMTFKDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAF
SLPILAQIDPTEKHPQLLVMAPTRELAIQVADACEQFVKYAKGINIVTLYGGQRYDIQLR
ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH
HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGVRKNDALLRFL
EVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVV
ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNV
EHLIKKNIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDI
AAAMMMLLQGKQKLILPPDPVVDKKARRDRNERSDRRENPRSAERRGERKGYGSPQPMDL
YRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFAKT
RVLNKQMRMSFIGEAKGERGGDNFGGKRRGGRFEDKGFKGDRKFKEKSHRTFKEKREFRK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactaaaatgactttcaaggatttaggcttgcctgaattcatccttaatgcg
gtttccgatcttggctttgaaacaccatctccaattcaacaaatttgcataccgcactta
ttagaaggccgtgatgtactgggcatggcacaaaccggtagtgggaaaacagcggctttc
tctttgcctattttggcgcaaatcgatccgaccgaaaaacacccacaattattagtgatg
gcgccgacccgtgaattagctattcaagttgcagatgcatgtgagcaattcgtgaaatat
gccaaaggtatcaatattgtgactttgtacggtggtcaacgttatgacatccaattacgt
gcgttaaaacaaggagcgcaagttgtggtggggacaccgggacgtattttggaccaccta
cgtcgtggcaccttaagccttgctgaacttaaagccattgtgttagacgaagcggatgaa
atgttgcgcatgggctttattgatgatgtggaaaccgtgatggccgaattaccggaacat
caccaaaccgcacttttctctgccactatgccggagccgattcgccgaatcaccaaacgc
tttatgaaagatccgcaagaagtcaaaattaaagcgacccaacaaagtgcaccggatatt
gcgcaaagttgttggtatgttcatggcgtccgcaaaaatgatgccttgttgcgtttcttg
gaagtggaagattttgatgcggcgattattttcacccgcactaaaaccggcacattagac
gtaacggaattgttggaaaaacacggtttccgtgcggcagcattgaatggcgatatgaca
caacaattacgtgaacaaaccttagatcgtttgcgtagtggtagcttagatatcgtagtg
gcgacagacgtcgcggcgcgtggtattgatattgagcgtatcagtcttgtagtgaactac
gatattccactggatgcagaatcttatgtgcatcgtattggtcgtaccggtcgtgcagga
cgttccggtcgtgcgttattattcgtggaaccgcgtgagcgtcgtttgttgcgcaatgtt
gaacaccttatcaagaaaaatattgaagaggtggaattgccgaaccatgaagtcttacaa
gcctgtcgtcgtaaaaaattcaaagataaaattaccacgcagttggaacaccatgattta
gagctttatcgtgaattgttggaagatatgtttactgccgaccaatcacaagaagatatt
gccgccgctatgatgatgttgctacaaggcaagcaaaaactgattcttccaccagatccg
gtggtggataaaaaagcacgtcgtgatcgtaatgagcgcagtgaccgtcgtgagaatcct
cgttcagcagaacgtcgtggtgaacgtaaaggctatggcagtccacaaccaatggattta
tatcgtattgaagtggggcgcggagacggtgtggaagttcgtcatattgttggcgctatt
gcgaatgaaggtgatattaatagtcgctacatcggtcacatcaagttgtatgatgattat
tccaccattgaattgccacaaggtatgccgaaagaattgttacaacaatttgcgaaaacg
cgagtgttgaataagcaaatgcgtatgtcttttatcggtgaagccaaaggcgagcgtggc
ggtgataattttggcggaaaacgccgtggcggtcgttttgaagacaaaggtttcaaaggc
gatcgtaaatttaaagaaaaatctcaccgcacttttaaagagaaacgtgagtttagaaaa
taa
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