Acinetobacter seifertii: I8T81_02425
Help
Entry
I8T81_02425 CDS
T07113
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asei
Acinetobacter seifertii
Pathway
asei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8T81_02425 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asei03019
]
I8T81_02425 (rnr)
03016 Transfer RNA biogenesis [BR:
asei03016
]
I8T81_02425 (rnr)
Enzymes [BR:
asei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I8T81_02425 (rnr)
Messenger RNA biogenesis [BR:
asei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8T81_02425 (rnr)
Transfer RNA biogenesis [BR:
asei03016
]
Prokaryotic type
tRNA degradation factors
I8T81_02425 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QPV59723
LinkDB
All DBs
Position
complement(496833..499253)
Genome browser
AA seq
806 aa
AA seq
DB search
MTKNWADPEAKAEAERYDNPIPSRTLILDTLEQLQTPQSHAELVDHFHIQDQKSIEALSH
RLSAMVRDGQIMKDGFKFQLVADQPTYEATVYINSKGLGTAHIDGQNDLLLPERELRLVF
NGDRVRVRQTSVDRKGKPWGFITEVLQHRVKQLIGKLSIHDGEYFIQPNNPNQHQPIPLE
KELVAHANANVGDMLRIAIDTYPTREEFATAHIIQSMADKADTEIIIPQTILEFGLPYEF
PDEVIKEAESFKEPSAQDREGRVDLRDLALVTIDGEDARDFDDAVYAEKRPGGGYRVVVA
IADVSHYVRLDSALNEEAEERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLK
LSRNGRVTGYEFYPSVMHSKARLTYTQVAQYFDGATDAIPKDRDIHKSLNTLFQLYQILK
NLRADRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEYALEHD
VPMLYRVHEAPEFSRIQKVKDFVKLLGLPFPDQPTQADYQKVIEATKDRIDAPSIHAVLL
RSMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLKQKPSPLSGAALDD
AGEHFSQTERRADEASRSVTTWLKCHYMQQHLGDEFIGIVSAVTEFGLFITLKDLYVDGM
IHISQLGDDFFIYDQASQNLIGQNRGQVFGLGDEVKIQVAGVNLEERKIDFQLIQQVTHA
GRVVRSRAPRTTRTSTQATEEVFGKPPTTSNDGEKPVRKKKEKGKPSSYTKKSGKKTTTK
AEVKPEKVKKKAKPKKKKSNAKSKAD
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaactgggctgaccccgaagcgaaagctgaagctgaacgttatgacaatccg
attccaagtcgtactcttattttagatacattggagcaattgcagacaccacaatcccat
gcagaacttgttgaccattttcatattcaagaccaaaaaagtatcgaagctcttagtcat
cgcttaagtgcaatggttcgtgatggtcaaatcatgaaagacgggtttaagtttcagttg
gtggcagaccaacccacttatgaagcgactgtctatattaatagtaaaggtttaggtacc
gctcatattgacggccaaaatgaccttttacttcctgaacgtgaattacgcttagtcttt
aatggtgatcgggttcgagttcgacagacatcagtagatcgtaaaggtaaaccgtggggt
ttcattaccgaggttctacagcaccgtgtaaaacagttaattggtaaattgtctatacac
gacggtgaatactttattcaacctaataatccaaatcagcaccaaccgattccattagaa
aaagaattagttgcacatgccaacgcaaatgttggcgacatgcttcgtattgctatagat
acctacccaacccgtgaagagtttgcaacagcgcatattattcaatctatggcagataaa
gcggatactgaaattattatcccgcagaccattcttgagtttggcttaccttacgaattt
ccagatgaagttataaaagaagctgaaagttttaaagaaccttctgcacaagaccgcgaa
ggtcgagttgatttaagagatttggcactcgtcacaatcgatggtgaagacgcacgagat
ttcgatgacgccgtgtatgcagaaaaacgtccaggtgggggttatcgcgttgtagttgca
attgccgatgtgagccattatgtgcgcttagattcagctcttaatgaagaagcggaagaa
cgtggtacttcggtttacttccctcattttgtattaccaatgctaccagaagcattatca
aacggattatgttcacttaacccgcacgtagaccgtttatgtatggtctgtgatctaaaa
ctctctcgtaatggtcgtgtaacgggttatgagttttatccatctgtgatgcactcaaaa
gcacgtttgacctacacgcaggtagcgcaatactttgacggcgcaactgacgcaattccg
aaagatcgtgatattcataaatcgcttaatacgcttttccagctttatcagattttgaaa
aatttacgtgctgatcgtcatgcaatggaatttgaaaccattgaaacgtatatgactttt
gatgagctaggtggaattaaagaaattttgcctcgcacacgtaatgaagcacacaaactt
attgaagaatgcatgttgcttgctaacgtggctgcggctgaatatgcattagaacatgat
gttccaatgttatatcgcgtacacgaagcgcctgagttctcacgtattcagaaagtaaaa
gactttgtaaaacttcttggcttaccgttccctgaccaaccaactcaagcagattatcaa
aaagttattgaggcaactaaagaccgcattgatgcgccaagcattcatgcagtgttatta
cgctcaatgatgcaagcttactatggtgcaaaaaatgccggtcactatggtttagcttat
gaagcttatacgcatttcacctccccaattcgtcgctatccagacttattattacatcgc
gcaattaaagctcatttaaaacaaaagccgtccccactctcgggtgcagctttagacgat
gctggtgaacatttctctcaaaccgaacgccgtgcagatgaagcatctcgcagtgtaacg
acttggttgaagtgccactatatgcaacagcacttaggtgatgaattcattggtatagta
agtgctgtcactgaatttggcctatttattacccttaaagacttatatgtcgatggcatg
attcatattagccagcttggcgatgacttctttatttatgatcaagcgagtcaaaacctt
attggacaaaatcgtggtcaggtctttggtttaggtgatgaagttaagattcaggttgct
ggtgtaaatctggaagaacgtaagatcgattttcaacttattcagcaagtcacccatgct
ggacgagtagttcgcagtcgtgccccacgtacaaccagaacatcaacccaagcaactgaa
gaagtttttggtaaaccacctaccacttcgaatgatggtgaaaaacctgtccgtaaaaag
aaggaaaaaggtaagccaagttcatatactaaaaagtctggtaaaaaaaccactacgaaa
gcagaggtcaagccagaaaaagtaaagaaaaaagcgaaaccaaaaaagaaaaagtcgaat
gccaagtccaaggctgactaa
DBGET
integrated database retrieval system
