Acinetobacter seifertii: I8T81_10515
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Entry
I8T81_10515 CDS
T07113
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asei
Acinetobacter seifertii
Pathway
asei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I8T81_10515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asei03400
]
I8T81_10515 (mfd)
Enzymes [BR:
asei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I8T81_10515 (mfd)
DNA repair and recombination proteins [BR:
asei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I8T81_10515 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPV57743
LinkDB
All DBs
Position
complement(2278948..2282409)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIATQHSSLLVLVARNNQHVAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPHQGVLLISASTLAQRVAPY
SWVLGKHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQEAPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEARSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKEQMQSQSMFTTYLPKNCIVITTNDVDIDLTNFW
KEVMRRYEDRRHNIDQPILAPEELFISPNHLLSALNQFPRMLVSAETVEEKAGALNLKTE
QPPKLPVDPKKEKPFTAVKKYIDDANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFKTSQFAIAITNAPLDRGLLITDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHVKNIEDLADGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAVLRELLRGGQVYFLHNEVDTIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLIPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISSTDTQEKLDNIRMELIDRFGVPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGHVEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEEYEKRIQFI
NDLLQKLMSELHV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttgcaacagctcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagccgctttattgcttaaagaaattgcgactcag
cattcttctttattagttttagtcgctcgaaataaccagcatgttgcacaattagaaagt
gaacttgagttttatggaataaaaccgacaattttccctgattgggaaattttgccttat
gatcggttatctccgcatcaggatattgtctcggagcgtcttgcgattttatcgaatatg
ccgcatcaaggcgtattactcatctcagcaagtactttggctcaacgcgttgcaccttat
tcatgggttttaggtaaacactttgatataaaagtgggacaaaaatttgatttagaacag
caaaaattaagattggttcaggctggctaccacttagtagatacagtatatgatcatggg
gaatttgcggtacgtggcagtattatggatatttttgcatctgggcaagaagctcctatc
cgtatagacctatttgatgatgaaattgattctttaaaattctttgatcctgaaacccaa
agaacaactacaacgctaaaaagttttacagttttacctgctaaggaatttccattaaaa
gaagcacggtcagtttttagagatcgttattctgagtttttcccgacagcaaaccctaag
aaaaatccaatttatcaagatgttttagatggtatagcatctccaggaattgagttttat
ttacctttattttttgataaagaacaaatgcaatcgcaaagtatgtttacaacgtactta
ccaaagaattgtattgtaattacaactaatgatgttgatatcgatttaacaaacttctgg
aaagaagttatgcgtcgttatgaagatcgacgccataatattgatcaacctattcttgct
cctgaagagttatttatttctccaaatcatttgttgagtgctttaaatcagtttccacga
atgcttgtgagtgcggaaacggttgaagaaaaagctggtgcacttaaccttaaaactgaa
caacctcctaaattaccagtcgatcccaaaaaagaaaaaccatttaccgctgtaaaaaaa
tatattgatgatgcaaaccatcctgttctattagttgcggaaagtgcaggacgtcgagaa
agtttaaaagatgcattgcgttcaagtttgggggaaattccgaatgtagagaattttgag
caattcaaaaccagtcaatttgcaattgcgattaccaatgcacctttagaccgtggctta
cttataactgatcaattaacagttatttcagaaaatcagctttatgaacaccgagttgta
cagcgtcgtcgtaagcgacaacaggaagtttctgaagaatttctgattcgaagcttaact
gagcttagtattggtgctcctgttgtgcatattgatcatggcgtggggcgttatgctggc
ttaattacacttgctatcgaagggcaagactatgagttcttgcaactcgattatgctgaa
gatgctaaagtttatgtcccagtaacaaacttgcatctgattagccgttatagtggtggt
gatccagatttagcaccattacataaaattggtacagatgcttggagtaaggcaaaacgt
aaggctttagaacaaattcatgatgttgcagccgaacttttacatatacaggcacgtcgt
caatcaaaacctggctttgcttttgaattagatcaatcgctttatatgcaatttgcaagc
ggctttgcgtacgaagaaacgcttgatcaggccaatgcaattgaagccacactgtacgat
atgcaacaagcaaaaccaatggatagattggtgtgtggcgatgtaggttttggtaaaact
gaagttgccatgcgtgcagcgtttgttgcagtacaaaatggtaaacaagttgcagtttta
gttcctactacattgctcgctcaacagcactatgagtcttttaaagaccgttttgctgat
tggcctgtccgtatagaagtattatcacgatttggctcaaacaaaactcatgtgaaaaat
attgaagacttggctgatggtaaagtcgatattgtggtaggtacacataagctattacaa
gaaaatgttcagtttaaagatttgggtctaatggttgtagacgaagaacatcgctttggt
gtacgcgataaagagcgaattaaagctttacgtgccgatgttgatatgttgactcttaca
gcaacaccaattcctcgtacgcttaatatggctttctctggtatgcgtgatttgtcaatt
attgcaactccgcctgcacgtcgtttagcagtgaaaaccttcgtacaagagcatacagat
gcctcgattaaagaagcagttttgcgtgagttattacgtggtggacaagtttacttcttg
cataatgaagtagataccattgaacgagctgctgaaaatatccgtgttcttgtacctgaa
gcacgcgtagctgtggcacatggacaaatgcgtgaacgtgagcttgagcaagtcatgcag
cagttctatcacaaagaatataatgtactggtatgttcaactattattgaaacgggtatt
gatgttccaaatgccaatacaatcataattgaacgtgcagataagcttggtttagcgcaa
ttacaccaactacgtggccgcgtaggtcgttcacatcatcaggcttatgcttatttattg
ataccttcaatcaaacacttgaaaggtgatgctgaaaaacgccttgatgcaattcaacga
gcttctacattgggtgcaggtttcatgcttgctactgaagatttagaaattcgtggtgct
ggtgagttattgggtgagcaacaaagtggttcaatgcaagcgataggatatagcttgtat
atggaaatgcttgagaaagcgaccaaagcaattcaacaaggtaaaacgccgaattttgat
gcaccattgtcgttaactgctgaaattaatttacatattcctgcgcttatcccggatgat
tacttaggcgatgttcatcaaagattattattctataagcgtattagtagtaccgatact
caggaaaaattagataatattcgaatggaactgatagaccgttttggtgttcctccacag
tcggttaagcatttgtttagtgtgcatcagattcgcttaaaagcagaacatttaggtatt
acaaaaattgatattaatactcaggggggacatgttgaattctcaccagataccccagtt
caagccattagtattattcaattgatgcaaaagaatccgacctattatcgtatggaaggt
ggtcaacgtttaaaggtaatggttcagctcgaagagtatgaaaaacggattcaatttatc
aatgatctactacaaaaattgatgagtgaactacatgtctga
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integrated database retrieval system
