Acinetobacter seifertii: I8T81_16730
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Entry
I8T81_16730 CDS
T07113
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asei
Acinetobacter seifertii
Pathway
asei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8T81_16730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asei03019
]
I8T81_16730
03009 Ribosome biogenesis [BR:
asei03009
]
I8T81_16730
Enzymes [BR:
asei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I8T81_16730
Messenger RNA biogenesis [BR:
asei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8T81_16730
Ribosome biogenesis [BR:
asei03009
]
Prokaryotic type
rRNA processing factors
I8T81_16730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPV58897
LinkDB
All DBs
Position
3623496..3626813
Genome browser
AA seq
1105 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQSTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHY
EIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHATAQTSNNAPAQKKA
NQASQPVAQQAVAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRG
QFGQVAIPPVAEVAPVQSNNAYISQSPVKQEVREHVEKDDRSQQQRQNNKKRKHKEQREQ
HHQAHEQQHQVHEEVVQLSRQEQRELKRQQKRQQHQDQQHQNNDVQQQTENVVPRRDRNN
QQRPNRPNRHRDPSVLNENQNTPAAPVVVDEKQVKVDVIDAPKHDVMNTALIINVDQGQS
EIVALTPEQKVEHVEAAPVEVAQEPTPAPVVEEKAVVAETKEAQPTKEATQPQIQRASND
PRMRRRQQREAKQAKAATPTVTPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFGLVPTFN
RALQKFTEQYASTLVVEVTSETEEKKPVTRDAELPSHKPAEEAEPAPVLPLTPSQAPTPR
VANDPRERRRLAKLAAEQAFEQVKQQHSTQEEVATPAPVVVETVVAPVAETQAPVESKQQ
PLELDQVTEVATSVEEAPVEAVVEAPIAKQPKAAAKAKAAQEQAAESTEAPTESESEDSK
ADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcacgccgaagaagttcgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtcacccgcgtagaaccttctttagaagctgtttttgttgaatac
ggcgcaggccgtcaaggcttcttgtctatgcgtgaaattgcgaatagctatttccaggca
gatcctcgtcagacttcaaacattcgtgaacttattactgaaggcacagagcttttagtt
caggttgaaaaagaagaacgtggcaataaaggtgcagcgctttctacttttatttctcta
gcaggtcgctatttagttcttatgccaaataaccctaaaggtggcggtatcagccgtcaa
atttcgggttcagtacgcgaagagttaaaagaaattttagcctctttaaatgtacctcgc
ggcatgagcgtgattgtacgtactgctggtattggccgtactcaagaagaattacagctt
gatttacagcacttacttgacctttgggcacaaattcaaagtacagcaagttctggccct
tctccaatgcttgttcaccaagaagctggtgttgtaacacgcgcaattcgtgattactta
cgtgatgacgttgctgaaatcttaattgatagcgaacaagcttataacgaagcttataac
tttgttaaagcagtcatgcctcgtcaattagacaaattaaaaacttatactttaaatgag
ccattgtttgctcattttggtattgaaagccaaattcaaactgcttacgagcgtgaagta
aaacttccatctggcggttcaatcgtgattgaccagactgaagctttagtttcaatcgat
attaactctgcgaaatcaactcgcgggcatgatgttgaagaaactgcgcttaataccaac
cttgaagcagcagaagaaattgctcgtcaacttcgtcttcgtgacattggcggtttagtt
gtcatcgacttcatcgatatgactaaagagcgcaaccaacgtatggttgaagcaaaactt
cgtgaagcaacccaaagcgatcgtgcccgtatccagttcggtcagttgtctcgttttggc
ttaatggaaatgagccgtcaacgcttacgtccatcgcttgaagaagcaacaggttatgta
tgtcctcgctgtcatggtacaggcatggttcgtgacctacgttcgctttctctttcaatc
atgcgtaaagttgaagagattgctcttcgtgaacgtcatggtgaagttcaggttgaagtt
ccagttgaaattgcagccttcttgcttaacgaaaaacgccatagtctggtgtatttagag
caaacttctggtgtacgtgtgactgtattacctcacccgcacttagaaactccgcattac
gaaattgcttataacccagacggttttgctccatctagttatgaacgtactgaagcaact
cgctcaagcgagaaagagctgggttatgagtcttctgaatggcatttagaagaagcagat
cacgggcatgcacatgcaacagctcaaacttcaaataatgctccagctcagaaaaaagca
aaccaagcaagtcaacctgtagcacagcaagctgtagctcaaaaagcggcaagtccttgt
gcatggttagaaaacttatttgttcaaaaacaagcgcaaactgttgatcaatctcgttca
gcacagaatgccgcagctgcgattgagcaaatggtaaatactggtgctgttagccgtggt
cagtttggtcaagtggctatacctcctgttgccgaagttgcgccagttcagtcaaataat
gcttatatttcacagtcacctgtgaaacaagaagttcgtgaacatgttgaaaaagatgat
agatctcaacaacaacgtcagaacaacaaaaagcgcaaacataaagagcaacgtgaacag
catcaccaagctcatgaacaacaacatcaagttcatgaagaagtggttcagttgtcacgc
caagagcaacgtgaattaaaacgtcagcaaaagcgtcaacaacaccaagatcagcaacat
caaaataatgatgtacaacaacaaactgagaatgttgttccacgccgtgatcgtaataat
caacaacgtccaaaccgtccaaatcgccatcgcgatccaagcgtattaaatgaaaatcaa
aatacgccagcggcaccagtagttgttgatgaaaaacaagttaaagtggatgtaattgac
gcacctaaacatgatgtcatgaacacagctttaatcatcaacgttgaccaaggtcaaagc
gaaattgttgcgctaacgcctgaacaaaaggttgaacatgttgaagcggctcctgttgaa
gttgctcaagagccaactcctgcaccagttgtagaagagaaagctgttgttgcagaaaca
aaagaagcacaaccaactaaagaagctactcagcctcaaatccaacgtgctagcaacgat
cctcgtatgcgtcgtcgtcagcaacgtgaagctaaacaagctaaagcagctactccaact
gttacgccatcgcaaattccaactttggcacaatacacaattggtagcttaattcgtcac
gtatatggcgaagactgcactgtgttaattgaacaatttggtttagtaccaacgtttaat
cgtgctttgcagaagtttacggaacagtacgcaagtactttggtggttgaagtaacttca
gaaacagaagagaaaaaaccggtaactcgtgatgcagaacttccaagccataaaccagct
gaagaagcagaaccagcaccagtgcttccgcttactccatcgcaagcgccgactccacgt
gttgcaaatgatccacgtgaacgtcgccgtttagcaaaattggctgctgagcaagcattt
gagcaagtgaaacaacaacactctactcaagaggaagtagctacccctgctcctgtagta
gtagaaactgttgttgctcctgttgctgaaacacaagcgcctgttgaatcaaagcaacaa
ccgcttgagcttgatcaggtaactgaggtggcaactagcgtagaagaagcgccagttgaa
gctgtagtagaagctccaatcgcgaaacagccaaaagcagcggcaaaagctaaagcagct
caagaacaagctgctgagtcaactgaagctccgacagagagtgaatcagaagattctaaa
gctgataaggacaaaccaagtcgtcctcgtcgccctcgtggccgtccacccaaaaaagct
aatcctgtagctgagtaa
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