Achromobacter seleniivolatilans: RAS12_05755
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Entry
RAS12_05755 CDS
T09953
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
asel
Achromobacter seleniivolatilans
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asel03009
]
RAS12_05755 (rlmD)
Enzymes [BR:
asel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RAS12_05755 (rlmD)
Ribosome biogenesis [BR:
asel03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RAS12_05755 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_32
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WMD21881
LinkDB
All DBs
Position
1285431..1286927
Genome browser
AA seq
498 aa
AA seq
DB search
MSDVLSIESLDLEARGIARRDGKVVFVEGALPGERVTAITVRRKPSYEIAKVDEVLRPSS
QRVVPRCPHFGVCGGCAMQHLEPSTQVAIKQRSLEDTFWHVGKLRPALILAPLQGPTWGY
RYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPHHVSDLLMPLRAMIASMSEPD
RMPQIEVALGEGVTALVLRHLLPLTDGDIAILRAFAVKHDVQWWLQAKGPDTVHALEPEH
NDALSYTMPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLDVQPTDRVADLFCGLGNFT
LPLATQGREAVGVEGSKPLTDRAHEAASRHGLGDRTSFATLNLFEVDATWLRSLGFFDRM
LIDPPREGAHAVSQALAELTAEERPRRIVYVSCNPATLARDAAILVHEGGYVLKSAGVIN
MFPHTGHVESIAVFESLDAAGVAEVKERARLRAIQAAADAVAAEEAKLAAAAEKAAAKQA
ATDAYHARVAAEAEDAQG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgttttgagtatcgaatccctggacctggaagccaggggtattgcccgccgc
gacggcaaagtggtgttcgtcgaaggcgccttgcccggtgaacgggttaccgccattacc
gtacgccgcaagccgtcctacgagatcgccaaggttgatgaggtgctgcgcccgtcgtcg
caacgggtcgttccgcgttgcccgcactttggcgtctgtggcggctgtgccatgcagcac
ctggagcccagcacgcaagttgcgatcaagcagcgttcgctggaagacaccttctggcat
gtgggcaagctgcgtcccgcgctgatcctggccccgttgcaaggcccgacatggggctac
cgctatcgcgcgcgcctgtcggtgcgcgtggtgcccaagaagggcggcgtgctggtgggc
tttcacgagcgcaagagcagctatgtggccgacatgcgtgaatgccacgtgctgccgcat
cacgtcagcgacctgctgatgccgctgcgcgccatgatcgcgtcgatgtccgagccggac
cgcatgccgcagatcgaagtggcgctgggcgaaggcgtgaccgcgctggtgttgcgccat
ctgctcccgctgaccgacggcgacatcgccatcctgcgcgcattcgccgtcaagcacgac
gtgcagtggtggttgcaggccaagggcccggataccgtgcacgcgctggaacccgaacac
aacgacgcgctcagctacaccatgccggaattcggtttgcgcatgccgtaccgtcccacg
gatttcacgcaggtgaatcacgccatcaaccgtgcgatggtgtcgcgtgcgttaaagctg
ctggatgtacagccgacggaccgcgtggccgatctgttctgtggcctgggcaacttcacg
ttgccgctggccacacaaggccgcgaggccgttggcgtggaaggcagcaagccgctgacc
gaccgtgcccacgaagccgcatcgcgccacggcttgggcgaccgcaccagctttgccacg
ctgaacctgtttgaagttgacgcgacctggctgcgcagcctgggctttttcgatcgcatg
ttgatcgatccgccgcgcgaaggcgcccacgctgtgtcgcaagccttggcggaactgaca
gccgaagagcggccgcgccgcatcgtctacgtgtcctgtaacccggccaccctggcgcgc
gacgccgctattcttgtgcacgaaggcggttatgtgctcaaaagcgctggcgtgatcaac
atgttcccgcacacggggcatgtggaatccatcgcggtgtttgaatcgctggatgccgct
ggtgtggcggaagtgaaggagcgtgcccgcttgcgcgccattcaggcagcggcggacgcg
gttgctgcggaagaggccaagctggcagctgccgccgagaaagcggcagccaagcaagct
gccacggatgcctaccacgcccgcgtggcggcggaagccgaagacgctcagggctga
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