Achromobacter seleniivolatilans: RAS12_10495
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Entry
RAS12_10495 CDS
T09953
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RAS12_10495 (pdeR)
Enzymes [BR:
asel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
RAS12_10495 (pdeR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EAL
GGDEF
PdeR_N
PAS_9
PAS_4
PAS
PAS_10
Nre_C
CRISPR_Cas2
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
WMD22776
UniProt:
A0ABY9M6X3
LinkDB
All DBs
Position
complement(2386117..2388114)
Genome browser
AA seq
665 aa
AA seq
DB search
MTENQDEKAILHTHFGTHSPYWRLSADSDAFELSAVKGATNVATALRPDQADTIRSLTGI
TSSVRIDIALHGDMLRLHLVGRKINPNEWAGTASAHSDTESVAKDLVEGLSFAETVVSEA
NSVIVIVDQNGRVQRFNKLSEEYTGKREQDIVGRSVFEMFMTREEAIASRRNIAEFYKRG
QSYEVERTINTVKGRRLFLFRNKFVTSGSGEKRVYLICSGTDITEERQAQERLRVLANTD
TLTNLPNRHAITTRLKGALAAGLEGKGGVLFLDLDNFKRINDHYGHGFGDRLLKAVSVAI
STCLSEGQTLARLGGDEFIVLQEQAQAWELEATAERIIERLREPFRQGLIEVYTSCSIGI
AMYPDHGADLDSVVRSADIAMYVAKEAGRHTYRVFQPEMDRRNADYVWLDTNLRKALAEN
HLMLYYQPKLAGRTGEVDSVEALLRWRSPERGLVCPSIFIPYAEESGLIAPLGVWVMREA
ARQAAAWKRDGLNIRIAVNMSARQLDDKGVVSDFMRAIGDAGLDPCMLDIELTESCLIDD
EGAAIDLIKQFRQLGARVHLDDFGTGYSSLSQLARIPLDAIKLDASFVRGVNENPVSQAL
ARAIVAVARTLELKVIAEGVETAEETAFLDTLGVDAKQGYLYAKPMPASEFTTWLANRRR
LHLIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaatcaggacgaaaaagcgatcctgcacacgcatttcggtacacatagtcct
tattggcgtctgtcagccgacagcgacgccttcgagctttccgcagtcaagggcgctacc
aacgtcgccacggcgctgcgcccggatcaggcggacaccatccgatccctgacgggcatt
acgtcaagcgtccgcatcgatatcgcgctgcatggggatatgctgcgcctgcatttggtt
ggccgcaagattaatccgaacgaatgggctggcaccgcatcggcgcattccgacaccgag
tccgttgccaaagacctggttgaaggcctgtcgtttgccgagaccgtggtgtcagaagcc
aattccgtcatcgtcatcgtcgaccagaacggccgcgttcagcgctttaacaagctgagc
gaggaatacaccggcaagcgcgagcaggacatcgtgggccgcagcgtgttcgagatgttc
atgacgcgcgaagaggccattgcgtcgcggcgcaatattgccgagttctataaacgcggc
cagtcctacgaagttgagcgcaccatcaacacggtcaagggccgccggctgttcttgttc
cgcaataagtttgtgacgagcggcagcggtgagaaacgtgtctacctaatctgctcgggt
acggacatcaccgaagagcgccaggcgcaggagcgtttgcgtgtgctggccaacaccgac
accctgaccaacctgcccaaccgccacgccatcacgacgcggctgaaaggggcgctggcg
gcggggcttgaaggtaagggtggcgtgttgttcctggacctggacaacttcaagcgcatt
aatgatcactacggccatggttttggcgaccgcctgctcaaggcggtgtcggtggcgatt
tccacctgcctgtccgaaggccagaccctggcccggctgggcggtgatgagttcatcgtc
ttgcaggaacaggcgcaggcttgggagctggaagccacagccgaacgcattatcgagcgt
ttgcgcgaacccttccgccaagggctgatcgaggtctacaccagttgctcgatcggcatt
gccatgtaccccgatcacggcgcggacctggacagcgtggtgcgcagcgctgatatcgcc
atgtatgtggccaaagaagcagggcgccatacctaccgcgtgttccagcccgaaatggac
cgccgcaacgcggactatgtgtggctggatacgaacctgcgcaaggctttggccgagaac
cacctgatgttgtactaccagcccaagctggctgggcgcacgggtgaagtcgatagcgtt
gaagccttgttgcgctggcgctcaccggaacgcggtttggtctgccccagcatattcatc
ccctacgccgaggaatctggtctgatcgcgccgctgggcgtgtgggtcatgcgtgaggcg
gcgcgtcaggcggcagcgtggaaacgcgatggcttgaatattcgtatcgccgtcaatatg
tcggcccggcaactggacgacaagggcgtggtcagcgatttcatgcgcgccattggcgat
gcgggcctggacccttgcatgctggatatcgaattgacggaaagttgcctgatcgacgac
gaaggcgcggcgatcgacctgatcaagcaattccgccagttgggcgcgcgcgttcacctg
gatgacttcggcacgggttactcgtcgctctcgcagttggcgcgtattccgctggacgcg
atcaagctggacgccagcttcgtgcgtggcgtgaacgaaaacccggtgtctcaagcgttg
gcgcgcgcgattgttgccgtggctcgcacgctggaattgaaggtcattgctgaaggggtg
gaaaccgccgaggaaaccgccttcctggacacgctgggagtggacgccaagcaaggctat
ctgtatgccaaacctatgcccgcgtccgagttcaccacttggcttgcaaatcggcgccgg
ctgcatctgattgcctga
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