Achromobacter seleniivolatilans: RAS12_12260
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Entry
RAS12_12260 CDS
T09953
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RAS12_12260 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asel03021
]
RAS12_12260 (rpoD)
Transcription machinery [BR:
asel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RAS12_12260 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
WMD23111
UniProt:
A0ABY9M7Z8
LinkDB
All DBs
Position
complement(2753083..2755356)
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AA seq
757 aa
AA seq
DB search
MTKSTGKSSSAIDAAETKATTAKRAVSMAAEKAPAKTAVKVAKPAAKTAAKKATKTATGA
EKPEKVTKARAKKAEDKLADLVSTPRSGPVPSGRRPGRPAKNANNDGDGFDDTMDGEGEV
LPDLKPPKRGGKRGKADAKDLIARGPVTPEEYEARRNRLKQLIKLGKDRGYLTYGEINDH
LPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTT
VDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILA
HILRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDESDDGPAGGMSSKQLEDLRVKA
LAKFDEVSKQFDKMRLSYEKDGYKSDIYVRAQESIQNELMGIRFTAKMVEKLADTLRNQV
EEVRQLERAVLHTCVDRAGMPRLHFIKVFPGNETNLQWVVDEVAAGHPYAETLERQIPAV
QELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNR
GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI
ETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDS
HLGDFIEDTSTLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVG
KQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccaccggcaaatcctcctctgcaattgatgcggctgaaaccaaggccact
acggccaagcgcgccgtaagcatggcggcggaaaaagcgcctgccaagacggcggtaaag
gtcgccaagcccgctgccaagacggctgccaaaaaggcaaccaagacggcaactggtgct
gagaagcccgaaaaagtaacgaaggcacgtgccaagaaggccgaggacaagctcgccgat
ctggtgagcaccccacgttcgggtcccgtgccgagcggccgccgtccgggccgccccgcg
aagaatgccaataatgatggcgacggattcgacgacaccatggacggcgaaggcgaagtg
ctgcctgacttgaagccgcccaagcgcggtggcaagcgcggcaaggccgacgccaaggac
ctgatcgctcgcggtcccgtgacgccggaagaatacgaagcgcgccgcaaccgcttgaag
cagctgatcaagctgggtaaagaccgcggctacctgacgtacggcgaaatcaacgaccat
ctgcctgacgatctggtcgatgccgaagccatcgacggcatcatcagcacgttcagcgac
atgggtatcgcggtctatgaccaggcacccgacgccgaaacgctgctgatgagcgaaaac
gcgccggtagcgtcgaacgacgacgacgtcgaagacgaagccgaagccgcgctcaccacc
gtggattccgatttcggtcgcaccaccgatcccgtgcgtatgtacatgcgcgaaatgggt
tcggtcgagctgctgactcgcgaaggcgaaatcgaaatcgccaagcgtatcgaagacggc
ctgaagcacatggtcatggccatctcggcctgcccgaccacgatcaacgagatcctggcc
cacatcctgcgcgtgcgggaaggccaagcgcagatcgacgaagtggtcgatggcctggtt
gatccggaagacggcgaggaatacgccggcgccggcgtcacggccgacgaagacgaaagc
gatgacggccccgcgggcggtatgtccagcaagcagctggaagacctgcgcgtgaaggcg
ctggccaagttcgacgaagtcagcaagcagttcgacaagatgcgtttgtcgtacgagaag
gacggctacaagtcggacatctacgtgcgcgctcaggaatccatccagaacgaactgatg
ggcatccgcttcactgccaagatggtcgagaagctggccgacacgctgcgcaaccaggtc
gaagaagtgcgccagcttgagcgcgccgttctgcacacgtgtgtggacagggccggcatg
ccgcgcctgcacttcatcaaggtgttcccgggtaacgaaacgaacctgcagtgggtcgtg
gacgaagtggccgctggccacccgtacgccgaaacgctggagcgccagattcccgccgtg
caggaattgcagcaaaagctgatcgacctgcaaacgcgcgttgtgttgccgctgaaggat
ctgaaggacgtcaataagcgcatggccaccggcgaagccaaggctcgcaaggccaagcgt
gaaatgaccgaggccaacctgcgtctggtgatctcgattgccaagaagtacacgaaccgt
ggcctgcagttcctggatctgattcaggaaggcaacatcggtctgatgaaggccgtggac
aagttcgaataccgccgtggctacaagttctcgacgtacgccacgtggtggattcgtcag
gccatcacgcgctctatcgccgaccaggcgcgcaccatccgtataccggttcacatgatc
gaaacgatcaacaagatgaaccggatcagccgtcagattttgcaggaaaccggtgctgag
cctgatcccgcgacgctggcgcaaaagatggacatgccggaagacaagatccgcaagatc
ttgaagatcgccaaagaaccgatctccatggaaacgccgattggtgacgacgatgactcg
catctgggcgatttcatcgaagacacgtcgacgctggcgccttccgacgcggcattgcac
ggttctatgcgcgatgtggtcaaggaagtgctagactctctgaccccgcgagaagccaag
gttctgcgcatgcgtttcggtatcgaaatgagcaccgaccagaccttggaagaagtgggt
aagcagttcgacgttacgcgtgagcgcattcgccaaatagaggctaaagctctgcgtaag
ctgcgtcatcctagccgcgccgataagctgaagagcttcttggaagggcaataa
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