Achromobacter seleniivolatilans: RAS12_12550
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Entry
RAS12_12550 CDS
T09953
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAS12_12550 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asel03021
]
RAS12_12550 (rho)
03019 Messenger RNA biogenesis [BR:
asel03019
]
RAS12_12550 (rho)
Transcription machinery [BR:
asel03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RAS12_12550 (rho)
Messenger RNA biogenesis [BR:
asel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RAS12_12550 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
WMD23169
UniProt:
A0ABY9M826
LinkDB
All DBs
Position
2818187..2819446
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AA seq
419 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GVAPEAIKHRIMFENLTPLHPNRTMRLERDIKSEENLTGRILDVFAPIGMGQRGLIVASP
KSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIAPDLLQKVWVLRKFIHDMDEVQSMEFILDKMRATKTNAEFFDMMKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactgaaggcgctgcatgtctcgcagctgctggaaatggccgctggc
ctggaaatcgagaacgccaaccgcctgcgtaagcaggagctgatgttcgccatcatgaaa
cggcgcgccaaacagggcgagcagatttttggcgacggcgtgctggaagtcctgcccgac
ggttttggtttcctgcgctcgcccgagacctcgtatctggccagcacggacgacatttac
atctcgccgtcgcagatccgccgtttcaacctgcacaccggcgactcgatcgaaggtgaa
gtgcgcacgcccaaggatggcgaacgctactttgctctggtgaaagtggacaaggtcaac
ggcgtagcgcctgaagcgatcaagcatcgcatcatgttcgaaaacctgacgccgctgcac
ccgaaccggacgatgcgtctggaacgcgacatcaagagcgaagaaaacctgacgggccgt
attctggacgtcttcgcccccatcggtatgggccagcgcggcctgatcgtcgccagcccc
aagtccggcaagacggtgatgatgcagcacattgcgcatgccatcaccaccaactacccc
gacgcggtcatgatcgtcctgctggtcgatgagcgccccgaggaagtgaccgaaatgcaa
cgcacggtgcgtggcgaagtggtggcgtcgactttcgacgaacccgctacccgtcacgtg
caagtggctgaaatggtcatcgaaaaggccaaacgcctggtcgaaatgaaaaaggacgtc
gtgatcctgctggactcgatcactcgtctggcccgtgcctacaacaccgtggtgccggca
tccggcaaggtgctgacgggcggcgtggacgccaatgccctgcaacgccccaagcgcttc
ttcggcgcagctcgtaacctggaagaaggcggttcgctgacgattctgggtacggcgctg
atcgaaaccggcagccgcatggacgaagtcatctacgaagaattcaagggcacgggtaac
tccgaagttcaccttgaacgtcgtctggctgaaaagcgcgtctacccgtcgatcaacctg
aacaagtcgggcacccgccgcgaagaactgctgatcgcgccggacctgctgcaaaaggtc
tgggtgctgcgcaagttcatccacgacatggacgaagtgcaatccatggaattcatcctg
gacaagatgcgcgccacgaagaccaacgccgaattcttcgacatgatgaagaagaagtaa
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