Achromobacter seleniivolatilans: RAS12_18980
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Entry
RAS12_18980 CDS
T09953
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
asel
Achromobacter seleniivolatilans
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
asel03016
]
RAS12_18980
Enzymes [BR:
asel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RAS12_18980
Transfer RNA biogenesis [BR:
asel03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RAS12_18980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF7691
RNase_P-MRP_p29
Motif
Other DBs
NCBI-ProteinID:
WMD18704
LinkDB
All DBs
Position
4203372..4205276
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AA seq
634 aa
AA seq
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MYVFYEDDGSFKAGNILSETDASLQVESESGKRSKIKRANTLFNFAAPEPAALMSQAAAA
ADALDLQFLWECAPQEDFDTPALAADYFGHAPTPVEQAALLMRLHSAPAYFHRRGKGRYR
PAPPDILAAALGALEKKQRQAEQQQEWVDEMAAGRLPEPIAQVAESLVIRPDKNSQQWKA
LDAACAKLGKSPDRLLLELGAWPHALALHKRRFLAVNFPRGLEFPELELPPIDRELPLSD
AEIYSVDDVTTTEIDDALSVTTLPDGRLRVGVHVAAPGLTVTRDSEFDKLARARLSTVYM
PGDKIPMQPDNVIKAFSLDAGREVPVLSLYVVADPETGEVIESETRLERVVVRENLRHNM
LDAQVTEASLADPSAELPYGHWLRPLWKLAQALSAQRENVRGKPENNSRVEYSFYLDGNP
DDPDTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLNQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDPDLFAIIGAF
DAQYAAWAEFQSAMERYWCLRWLKQHNITRTVAHVLRDDLVRLANAPLVTRVGGMPELER
GTAVEIDILGMDELGLELDCRYGGEVAAAVGGQE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgttttacgaagacgacggcagcttcaaggccggcaatatcctgtccgagacc
gacgccagccttcaggtggaatcggagtcgggcaagcgcagcaaaatcaagcgcgccaac
acgctgttcaatttcgcggcgcccgaacccgctgcgctgatgagtcaggcggcagccgct
gccgacgcgctggacctgcaatttttgtgggaatgcgcgccgcaagaagatttcgatacg
ccagccctggctgccgactacttcggccatgcccccacgcccgtggaacaagctgcgttg
ctgatgcgcctgcacagcgcgccggcctacttccaccgccgtggcaaaggccgctaccgc
cctgccccgcccgacattctggccgccgcactgggcgcgctggaaaaaaagcagcgccag
gccgagcagcagcaagaatgggtggacgagatggccgcaggccgcttgcccgaacctatt
gcccaggtcgccgaatccctggtgattcgcccggacaagaactcgcaacaatggaaagcg
ctggacgctgcctgcgcaaagctgggcaagagtccggaccgtctgctgcttgagctgggc
gcctggccgcacgcgctcgcgctgcacaagcgccgcttcctggcggtgaatttcccgcgc
gggctggaattcccggagctggaacttccgccgatcgaccgcgaactgccgctgtcggac
gctgaaatctattccgtggacgacgtcaccaccaccgaaatcgacgacgcgctgtctgtc
accacgctgcccgatggccgcctgcgtgtcggcgtgcacgtagctgcccccggcctgacc
gtgacgcgcgacagtgagttcgacaagctggcccgcgcccgcctgtccaccgtctacatg
ccgggcgacaagattccgatgcagccggacaacgtcatcaaggcgttctcgctggatgcc
ggccgtgaggtcccggtgttgtcgctgtatgtggtggccgaccccgaaacgggtgaagtc
atcgaatccgaaacgcgtttggaacgtgttgtggtgcgcgaaaacctgcgtcacaacatg
ctggacgcccaggtcacggaagccagtctggccgatccgtcggccgagctgccctatggc
cattggctgcgtccgctgtggaagctggcgcaagccctgtccgcgcagcgtgagaacgtg
cgtggcaagcccgagaacaattcgcgggtggaatacagcttctacctggacggcaacccg
gacgaccccgacacccccgtgcggctggtgccgcgccagcgcaatgcgccgctggaccgg
atggtggccgagtacatgattctggcgaacaacctgtggggcggtctgctgaaccagcac
ggcgtgcccggcatttatcgttcgcagcaggctggccgtgtgcgcatgagcacgcaagcc
ctgccgcacgaagccatcggcgtgccgcaatacgcctggagcacgtcgccgctgcgccgc
tatgttgatctggtcaaccagtggcagctgattgccgccgtggagcacggcgtatcagcg
cgtctggtggcgccgttcaaaccgcgtgatccggatctgttcgcgatcatcggcgcgttc
gatgcgcagtacgccgcctgggcggagttccagagtgcgatggagcgctactggtgcctg
cgctggttgaagcagcacaacatcacccggacggtggcccacgtcttgcgcgacgatctg
gtgcggctcgcgaatgcgccgctggtgactcgggttggcgggatgccggagttggagcgg
gggacggctgtggagattgatattttggggatggatgagttggggttggagttggattgc
cggtatgggggggaggttgctgctgctgtgggtgggcaggagtag
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