Achromobacter seleniivolatilans: RAS12_20400
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Entry
RAS12_20400 CDS
T09953
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel00040
Pentose and glucuronate interconversions
asel01100
Metabolic pathways
asel02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RAS12_20400
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RAS12_20400
Enzymes [BR:
asel01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RAS12_20400
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Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
WMD18971
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Position
complement(4527762..4528970)
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AA seq
402 aa
AA seq
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MKSGTTAIRWLLALATLYGGAAAASESCKSPDEHCPFVSALLAQREGYGAKATGGLGGKF
IEVTSDKDAGPGTLRDALAQAKKGPTWVRFASDMTIVLDSQLRVPSNITIDGRGKQVTLI
DDGLGVYGSKNVILTHLTIDGRLNRLTQAVNVANGSRDVWVDHMDLSRMSDRLLNVKNGS
TDVTISWTKFHNSNKVMLLNNITSKNLFENYDRDSIARVTLHHNYFFNTVQRNPRGQFGT
FHLFNNLLENWDFYGMSFSLEARALVEGNIFNNTTQRKCVEPEFFPTVEGINVNYCRYIP
IAAQRSALDNGESDRGAYEKLKTQHGYTRDYKAFLRLKDNLYLGDAKPVLQDYRPESAPT
PPYCYGYERPTPDLAEKIRKFAGNTAGDTPLPGSQTGSGCTR
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaggaaccactgcgatacgttggctgcttgccttggccaccttgtatggcggc
gcggcggccgcgagcgagtcgtgcaaaagcccggatgaacactgcccgtttgtctccgcg
ctgcttgctcaacgcgaaggctatggcgcgaaggctaccggcggcttgggcggaaagttt
atcgaggttacgtccgacaaggacgcggggccgggtacgttgcgggacgcgctggcgcaa
gccaagaaaggacccacatgggtccgcttcgcttccgacatgacgatcgtcctggattca
cagctgcgtgtgccgtcgaacataacaatcgatggacgcggcaagcaggtcaccttgatt
gacgatgggctgggcgtgtatggcagcaaaaacgtcatcctgacccatctcacgatagac
gggcgcttgaaccggctgacgcaagcggtgaatgtggccaatggcagccgcgacgtgtgg
gtggatcatatggatctttcgcggatgtcggacaggctgctgaacgtgaagaacggctcg
accgacgtcacgatttcatggacgaaattccataactcgaacaaggtcatgttgctcaac
aacataacctcgaagaatctgttcgaaaactacgaccgcgattcgatcgcgcgggtaacg
ctgcaccacaactatttcttcaataccgtgcagcgcaatccaagagggcaattcggcacg
ttccatttgttcaacaacctgctggagaactgggatttctacggcatgagtttcagcctg
gaggcccgcgcgctggtcgaagggaacatattcaacaacaccacgcagcgcaaatgcgtg
gagcccgaattcttcccgacagtggaaggaatcaacgtgaactactgccgttatatcccc
atcgccgcccaacgcagtgcgctggacaatggcgaatcagatcgcggcgcctatgaaaag
ttgaagacgcagcatggctacacgcgcgactacaaggccttcctgcggctgaaagacaat
ctgtatctgggcgacgcgaaaccggtgctgcaagactaccgccctgaatcggctccgacg
ccgccgtattgctacggctacgaacgtccgacgcccgacctggcggagaaaattcgtaag
ttcgccgggaataccgctggcgatacgccgttgccagggtcacagacggggtcgggttgc
acgcgttga
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