Achromobacter seleniivolatilans: RAS12_21025
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Entry
RAS12_21025 CDS
T09953
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAS12_21025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asel03019
]
RAS12_21025
Enzymes [BR:
asel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RAS12_21025
Messenger RNA biogenesis [BR:
asel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RAS12_21025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
WMD19090
LinkDB
All DBs
Position
4673615..4675153
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AA seq
512 aa
AA seq
DB search
MTTSSPFADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFT
LPILHLLMQQKPELRKPGRPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNIN
PQISALRKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILAL
LPKQRQNLLFSATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLI
SHIIRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDATV
TVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKL
LKDIERLIKKTIERKPVEGWTPSPTSAAAFERQERDEDARSPRGGNRNGGRGGNGGNAGR
SNGGGNAGAGRSRPAQGGQPRAAAGGRAPAPARAGGEGRGNGGPRDGKPADRPAHAGRGE
GRPQQSQRRPEGASRPAQGRPSGGPRAALLSK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgactacctcttccccttttgccgacctcgggctggctgattccctgttgcgcgctatt
gccgataccggctacaccgcacccacgcctattcaagcccaggccattccgcaagttctg
aaaggcggcgacctgctcgcagccgcccagaccggcaccggcaaaaccgccggcttcaca
ttgccgatcctgcatctgctgatgcaacaaaagcccgagctgcgtaagcccggccgcccc
cgctgcctgattctgaccccgacgcgtgaattgaccgcgcaggttgcggaatcggtgcaa
acctacggcaaatacacctcgctgacgtccatggtgatgtttggcggcgtcaacatcaat
ccccagatttccgcgctgcgtaagccgctggacatcctggtggccacgcccggccgcttg
ctggatcactgcggccagaaaacggtggacttgtccggcgttgaaattctggtgctggac
gaagccgaccgcatgctggacatgggcttcatccgcgacatccgcaagattctcgcgctg
ctgcccaagcaacgccagaacctgctgttctcggccacgttctccgacgagatccgcacc
ctggctcgcggtgtattgaataacccgggtgaagtttccgtcaccccgcgcaacaccgcc
accgaactggtcacccagacggtgcacatggtggaacagcaccacaagcgcgacctgatc
agccacatcatccgtgaaagcggctggcatcaggtgctggttttcacccgcaccaagcac
ggcgcgaaccgcctggctgaaaagctggtcaaggacggcctgaccgccgccgccatccac
ggcaacaagagccaatcggcccgcacgcgcgcgctggcaggcttcaaggacgccacggta
acggtgctggttgcgactgatatcgccgcccgtggcctggatatcgaccaactgccccag
gtagttaacttcgaactgcccaacgtgccggaagactacgtccaccgtatcggccgcacg
ggccgcgcaggcgccaccggcgccgcggtctcgctggtcgacaacagcgaaatcaagctg
ttgaaggacatcgagcgcctgatcaagaagacgatcgagcgcaagcccgtggaaggctgg
accccgtcgcccaccagcgcggccgctttcgaacgccaagagcgcgatgaagacgcgcgc
agcccgcgcggcggcaatcgcaacggcggccgtggcggtaacggcggcaatgcaggccgt
agcaacggtggcggcaatgcaggcgcggggcgttcacgcccggctcaaggcggccaaccc
cgcgctgccgctggcggccgcgccccggcgccggctcgtgctggcggcgaaggccgcggc
aacggcggcccgcgcgacggcaagcccgcagaccgtccggctcacgccggccgtggcgaa
ggccgtccgcagcaaagccagcgccgtcctgaaggggcttcccgccccgctcagggacgc
ccgtccggtggcccgcgcgcggcattgctaagcaagtaa
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