Achromobacter seleniivolatilans: RAS12_27880
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Entry
RAS12_27880 CDS
T09953
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
asel
Achromobacter seleniivolatilans
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asel03000
]
RAS12_27880 (rtcR)
Transcription factors [BR:
asel03000
]
Prokaryotic type
Other transcription factors
Others
RAS12_27880 (rtcR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA_5
AAA
AAA_16
AAA_22
MCM
AAA_2
AAA_30
AAA_33
T2SSE
AAA_14
Zeta_toxin
NACHT
TsaE
BrxC_BrxD
AAA_7
Motif
Other DBs
NCBI-ProteinID:
WMD20381
LinkDB
All DBs
Position
6181302..6182915
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AA seq
537 aa
AA seq
DB search
MKPVVVIGFIGTQLDAGVGSARWEKWRPTVALTQHEDRVVARMELLYTVRHRKLAELIQA
DIAAVSPETVVNLVEVQLDDPWDFGEVYNCLHGWARAYPFDVEREQYWAHITTGTHVAQI
CQFLLVESRVLPGVLVQTAPPRRQRSGTPGEITLIDLDLSRYDVIAQRFAAEQRDAVEFL
KRGIATRNARFNALIAEIERVAVRSRAAILLAGPTGAGKSFLARRMFDLKKARHHITGPF
VEVNCATLRGDTAAAALFGHRKGAYTGAVADRPGLLRTAHEGVLFLDEIGELGVDEQAML
LKAIEEKRFYPVGADREVESDFQLIAGTNRDLRREVAAGTFREDLYARINMWTYDLPGLA
ERSEDIEPNVDHLLALHASENHQMVRFNVEARKAYMTFAQSRDALWRGNFRDLSSSIQRL
ATLADGGRIGLDLVQAEIERLRWLWRRDEPATEGTQGAPALATLLGAGRVAAMDLFDRLQ
LEAVLRVCATSRSLSDAGRQLFQASRAERSVVNDADRLRKYLVKHGLSWDQLREIPS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagtcgtcgtcatcgggttcatcggcacgcaactcgatgcaggggtgggtagc
gcccgttgggaaaagtggcggcccacggttgcgctgacacagcacgaagatcgcgtggtg
gcgcggatggaactgctctataccgtgcgccatcgcaagctggccgagttgatccaggcc
gacattgccgccgtgtcgccggaaaccgtcgtgaatctggtcgaagtgcaactggatgac
ccctgggacttcggcgaggtctataactgcctgcacgggtgggcgcgggcctatcccttt
gacgttgagcgcgagcagtactgggcgcacatcaccacgggcacccacgtggcgcagatc
tgccagtttctgctggtggagtcgcgggtattgcctggcgtgctggtgcagacggcgccg
ccacggcggcagcggtccggcacgccgggcgagatcacgctgatagacctggacctgtcg
cgctatgacgtgattgcccagcgtttcgcggcggaacaacgtgatgcggtggagttcttg
aagcgcggcattgccacgcgcaacgcccgcttcaatgcgttgattgccgaaatcgaacgg
gtggcagtgcgctcgcgcgcagccattctgctggccgggcccacgggggcagggaagtcg
tttctggcgcgccgcatgttcgatttgaaaaaggcgcgccatcacatcacggggccattt
gtcgaagtgaactgcgccacgttgcgcggtgacacggcggctgcggcgctgttcgggcat
cggaaaggggcttacaccggcgcggtggccgatcgccccggtttgctgcgcaccgcgcac
gaaggcgtgctgttcttagatgaaatcggcgagctgggcgtggatgaacaggcgatgctg
ctcaaggccattgaggaaaagcgcttctatccggtgggcgccgaccgcgaggttgaaagc
gattttcagctgatcgcaggcacgaatcgggatttgcgcagggaagtggctgcgggcacg
ttccgggaagatctgtacgcccgcatcaatatgtggacctacgatttgcccggtctggct
gaacgcagtgaagacattgagccgaacgtggatcatctgttggcgctgcatgccagcgag
aatcatcagatggtgcggttcaacgttgaagcgcgtaaggcctatatgacctttgcgcaa
agccgcgatgcgctgtggcgcggcaacttccgggacctgtcctccagcattcagcgcttg
gcgaccctggccgatggcggacgcatcgggctggatctggttcaggctgaaatcgaacgt
ttgcgctggctgtggcgacgcgatgagccagccactgagggcacgcagggcgcgcccgcg
ctagccacgctgctgggcgcgggtcgcgtcgcggcgatggatctgtttgaccggctgcag
cttgaagccgtgctgcgggtctgtgcaacttcgcgcagcctgtccgacgccggacggcaa
ctgtttcaggcatctcgtgccgaacgcagtgtggtgaatgatgcagaccgtctgcgcaag
tacctggtcaagcatgggctgagttgggaccagctacgagaaattccgtcctag
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