Achromobacter seleniivolatilans: RAS12_28270
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Entry
RAS12_28270 CDS
T09953
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RAS12_28270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asel03000
]
RAS12_28270
03400 DNA repair and recombination proteins [BR:
asel03400
]
RAS12_28270
Enzymes [BR:
asel01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RAS12_28270
Transcription factors [BR:
asel03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RAS12_28270
DNA repair and recombination proteins [BR:
asel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RAS12_28270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
WMD20450
LinkDB
All DBs
Position
complement(6259482..6260927)
Genome browser
AA seq
481 aa
AA seq
DB search
MDLNHDACYSAIQVRDARYDGRFFTAVKTTRIYCRPVCPARTPLSKNVTFYTTAAAAQEA
GYHPCLRCRPETAPELGPGHEMPASVARALQLIELGALDEDGVETLAERLGVGDRQLRRQ
FRQHVGASPIAVAQTRRVLLAKQLIHETHLPMAEIAFASGFGSIRRFNEIFLDLFGRTPG
ELRRSEKPEVSAGQQGEIKLLLRYRPPYDWAAMLDFLRLRAITGIEQVGEDSYARTISLE
GHQGTMTVRPGTGNALQVTVRFPRLQALPAIIARVRRVFDLASDPVAIAAQFAQDPVMTA
LIQARPGLRVPGAWDGFELAMRAVLGQQITVAAAIRLAGKLVAAHGVPMTQAEGALTHVF
PEPETVAAAELASLGMPRSRAATLSAVAAAAVADKHLFDAASGLDEAVARLRKIRGVGEW
TAQYIALRQLREPDAFPSADIGLIRALERLESRDVSAAQLLARSEQWRPWRAYAAQHLWT
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggacctcaatcacgacgcctgttacagcgccatccaagtgcgcgatgcccgttacgac
ggccgctttttcacggcggttaaaacgactcgtatctattgccgccctgtctgcccggca
cgcacgccgctgtcgaagaacgtaaccttctacaccacggccgccgccgcgcaagaggcc
gggtatcacccgtgtctgcgttgcaggcccgagaccgcgccagagctggggcccggacac
gaaatgcccgccagtgtggctcgcgccttgcaactgatagaactgggcgcgctggacgag
gacggcgtggagacgcttgcagaacggctgggcgtgggcgaccgccaattgcggcgtcag
tttcgccagcatgtgggcgcgtcacccattgccgtagcccagacgcgccgcgtgctgctg
gccaagcaactgatccacgagacgcacctgcccatggcggaaattgccttcgcttcgggc
tttggcagcatccgccggttcaacgagatatttctggatttgttcgggcgcacgcccggc
gaactgcggcgctcagagaaacccgaggtgtcagccgggcagcaaggtgaaataaaactg
ctgctgcggtaccgcccgccctacgactgggcggccatgctggatttcctgcgcttgcgc
gccattaccggcatcgaacaggtcggcgaagacagctatgcccgcaccatcagcctggag
gggcatcaaggcacgatgacggtacgccctgggacgggcaatgccctgcaagtcacggtg
cgttttccccgccttcaggcgctgcctgccatcattgcgcgggtcaggcgcgtcttcgac
ctggccagcgaccccgtagccattgccgcgcagtttgcgcaggaccccgttatgaccgcc
cttattcaggcgcggcccgggctgcgcgtgccgggcgcgtgggatggctttgaactggcg
atgcgggccgttctgggccaacaaatcaccgtagccgccgccattcgcctggccggtaag
ctcgtcgcggcgcatggcgtgcccatgacgcaggccgaaggcgcattgacccatgtcttt
cccgaacccgagacggttgcggcagcagagctggcgtcactgggcatgccacgcagccgg
gccgcgacgctgtcggcggtagcggccgcggccgtggccgacaagcacctgtttgatgcg
gcgagcgggctggacgaagccgtggcgcgtctgcgcaagattcgtggcgtaggagaatgg
acggcgcagtacatagccttgcgccaattgcgggagccggacgcctttccatcagccgac
atcggattgatccgcgcgctggagcggctggaatcacgcgacgtgtccgcagcgcagcta
ctggcgcggtccgaacaatggcgcccctggcgcgcctacgccgcccagcatctgtggacg
gcgtga
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integrated database retrieval system
