Alkalimarinus sediminis: NNL22_01040
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Entry
NNL22_01040 CDS
T08621
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL22_01040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asem03019
]
NNL22_01040
03009 Ribosome biogenesis [BR:
asem03009
]
NNL22_01040
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNL22_01040
Messenger RNA biogenesis [BR:
asem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL22_01040
Ribosome biogenesis [BR:
asem03009
]
Prokaryotic type
rRNA helicases
NNL22_01040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UZW75224
UniProt:
A0A9E8HT09
LinkDB
All DBs
Position
222667..224508
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AA seq
613 aa
AA seq
DB search
MSSSEISFDQLELAEPILKAVKEAGYEVPSPIQAQSIPHLVNGHDLLGQAQTGTGKTAAF
ALPLLSRIDLSKKTPQLLVLAPTRELAIQVAEAFQTYARYMKGFHVLPIYGGSSYDGQLR
QLKRGVHVVVGTPGRVMDHMRRGTLKLDNLSALVLDEADEMLRMGFIDDVEWILEQTPEE
RQIALFSATMPTQIKKVTERYLNNPKHVKIEVKTSTADTIRQRYWQVSGLHKMDALTRIL
EVEPFDGMIIFVRTKTATVELAEKLEARGYSAAALNGDISQAVRERTVTRLKNKKVDILI
ATDVAARGLDVERISHVVNYDIPYDTEAYVHRIGRTGRAGRTGDAILFVSPREKRMLFSI
EKATKQKIEKMTLPTTEDVNDQRVSKFKQKITDTLASDDLEFFQKLLEQYQTEHDVPAIE
VAAALAKLVQGDEPLLLKPQPERRERSERYERGSRTERGERSRRPGDRKAKSLKDNPDID
MERYRIDVGYDHGVKPGNIVGAIANEANIEATYIGHIQIFDSFSTVDLPSGMPKETMESL
KKVWVCQQSLNIAPFDGEEGRSRGGRGAPRGDRGRKPGGSGARKPRRSNESGSGRPTSRP
ADKKPRVRKPKED
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatccgaaataagctttgatcaacttgagcttgccgagccaatacttaaagcc
gttaaagaagcgggttacgaagttccgtccccgattcaggcacaaagtattcctcacttg
gttaatgggcacgaccttttaggtcaggctcagaccggtaccggtaaaacagcggcattc
gctttaccgttactatcacgtatcgacctttctaagaaaacaccacaactgcttgtatta
gcaccgactcgcgagctagcgattcaggtagctgaagcatttcaaacctacgcccgttat
atgaagggttttcatgttctgcctatatatggtggttcatcttacgatggccagttgagg
cagctgaagcgtggtgttcacgtggtagttggtacgccaggtcgagtcatggaccacatg
cgtcgcggcacactaaaactcgataatctgtctgcactcgtgctagatgaagccgacgaa
atgttgcgtatgggctttattgatgacgtagagtggattctagagcagacgccagaagag
cgacagatagcactgttctcggccactatgccgacacagattaagaaagtaaccgagcgt
tacttaaataatcctaagcacgttaaaattgaagttaaaacgtcaactgctgatacgatt
cgtcaacgttactggcaggttagcggccttcataaaatggatgcgctgacacgcattctt
gaagttgagccgtttgacggcatgatcatctttgttcgcaccaaaacagccacggttgag
cttgctgaaaagcttgaagcgagaggttactctgcagcagcacttaatggtgatatttca
caggctgtgcgtgagcgaacggttacccgactcaagaacaagaaggtggatatcctaatc
gcgacagatgttgctgctcgtggcctggatgttgagcgtattagccacgttgtaaactat
gatattccctacgacacagaagcctatgttcaccgtattgggcgtacgggtcgtgcaggg
cgaaccggcgatgcgatcttgttcgtctccccccgtgaaaagcgtatgttgttctcaatc
gaaaaagcgactaagcaaaagatcgagaagatgacactgcctacgactgaagatgttaac
gatcagcgcgtatctaagtttaagcagaaaatcaccgatacactggctagtgatgattta
gagttctttcagaagttgttagagcagtatcagacagagcatgatgtgcctgcaattgaa
gttgctgccgccctggctaaattagtgcaaggtgatgagccattgttgcttaaaccacag
ccagaaagacgagagcgcagcgagcgttatgagcgtggtagccgaactgagcgtggtgag
cgttcaagaaggcctggtgaccgaaaagcgaaatctctaaaagacaaccctgatattgat
atggagcgataccgtattgatgttgggtatgaccacggcgtgaagcctgggaatatcgtt
ggggcgattgccaacgaagctaatattgaagcgacctatatcggccatattcaaatattt
gattcatttagtactgttgatttgccatcgggcatgccaaaagagacgatggagtcactg
aaaaaagtgtgggtttgccaacagtctttgaacattgcgccatttgacggtgaagaggga
cgctcaagaggcggaagaggtgcaccaagaggcgatcgcggacgaaagccaggtggtagt
ggcgctcgtaagcctagaagatctaatgagagtggctcaggtcgacctacctcaagacct
gccgataaaaagcctcgtgtcagaaaacctaaagaagattag
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