Alkalimarinus sediminis: NNL22_02615
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Entry
NNL22_02615 CDS
T08621
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03030
DNA replication
asem03430
Mismatch repair
asem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NNL22_02615 (holA)
03430 Mismatch repair
NNL22_02615 (holA)
03440 Homologous recombination
NNL22_02615 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asem03032
]
NNL22_02615 (holA)
03400 DNA repair and recombination proteins [BR:
asem03400
]
NNL22_02615 (holA)
Enzymes [BR:
asem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NNL22_02615 (holA)
DNA replication proteins [BR:
asem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NNL22_02615 (holA)
DNA repair and recombination proteins [BR:
asem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NNL22_02615 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
UZW75511
UniProt:
A0A9E8HMC2
LinkDB
All DBs
Position
complement(560467..561495)
Genome browser
AA seq
342 aa
AA seq
DB search
MKLKPEQLKSHLSNQLLPVYLINGDEALLVQESCDEIRKKCRSEGFTERLSWHADRQFDW
NQLLEEAGSLSLFGDKKIIEIRIDNGKPGDKGSKAIDQFCQTTSEDTVLLIITGRLDAST
QKRKWVTAIDKVGAQITLWPVSGDQLPGWIQARSRQMGLSLDKESIALLTERVEGNLLAA
KQELEKLALLCPDGNITAEQVTQSVADSARFDIFNLTDECIKGVPKHALHVLQGLKSEGT
EPPVILWALTRDLRVIYELSNASRLGQPPKAIFSAHRVISKRQNLLSRTASRVSHHQLNQ
LIKLSERIDQSIKGNKQHGSSWELLAEFVLLLSGQPSHLTPN
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttaaacctgaacagttaaaaagtcatctttcgaaccaactgctgcccgtctat
ttaataaacggtgatgaagcactgctggttcaagagtcttgcgacgagattcggaaaaag
tgcaggagcgaaggcttcacagaacgtttaagttggcacgcagaccgtcagtttgactgg
aaccaactgctagaagaagcggggagtttatctcttttcggtgataaaaaaataatcgaa
ataagaattgataacggcaaacccggcgacaaaggcagtaaagccatcgatcaattctgc
caaaccacttctgaagacactgtactcctgataattactggtcggcttgatgcttccact
cagaaacgcaaatgggtaactgccattgataaagtgggtgcacagatcacactctggcct
gttagtggtgatcaacttcctggctggattcaagcaagaagtcgacaaatggggctctca
ctcgataaagaatcaatagcgctgcttaccgaacgtgtagaaggcaacctgctagcagcc
aaacaagaacttgaaaaacttgccctactctgccctgacggcaatatcacagccgagcaa
gtgacacaaagtgtagctgacagcgcccgctttgatatatttaaccttactgacgagtgc
attaaaggcgtaccaaaacatgcactccatgtgctccagggtctaaagtctgaaggcacg
gaacctcccgttatactatgggctctcactagagaccttcgagtgatttatgagctatcc
aatgcaagccggctcgggcaaccacctaaagcaatattttcagctcatcgagtaatatca
aagcggcagaacctattgagccgcacagcatcaagagtatcccaccaccagctcaatcag
cttatcaagctatctgagcgtattgaccaaagcataaaaggcaataaacaacatggttcc
agctgggagctactcgccgaatttgtcctactgctcagcggtcaaccttctcacctaaca
cccaattag
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