Alkalimarinus sediminis: NNL22_04885
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Entry
NNL22_04885 CDS
T08621
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
asem
Alkalimarinus sediminis
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asem03032
]
NNL22_04885 (topA)
03400 DNA repair and recombination proteins [BR:
asem03400
]
NNL22_04885 (topA)
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NNL22_04885 (topA)
DNA replication proteins [BR:
asem03032
]
Prokaryotic type
DNA Topoisomerases
NNL22_04885 (topA)
DNA repair and recombination proteins [BR:
asem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NNL22_04885 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
DUF7838
Motif
Other DBs
NCBI-ProteinID:
UZW75919
UniProt:
A0A9E8KQJ2
LinkDB
All DBs
Position
1073927..1076614
Genome browser
AA seq
895 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSEFVVKSSVGHIRDLPTSGSASTSTPAERAKAAAKTRK
MSPEEKAKNKKRKAKEQLIARMGVNPEKDWAANYQVLPGKEKVVNELQRLAKTADTIYLA
TDLDREGEAIAWHLMQSIGGDESRYRRVVFNEITKKAIQEAFETPGELDQSRVNAQQARR
FLDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREQEIRAFNPEEFWEVYADLLAN
KKASTRFQVTKYQNENFRPVSEEETKRYTDFLNSAAYTVEKREDRPTSSKPNPPFITSTL
QQAASTRLGFSVKKTMMLAQRLYEAGYITYMRTDSTNLSKEAVEACRAYIDKSVGLEYLN
DQPRIYSSKDGAQEAHEAIRPSNVEVMGFQVSGLEKDAERLYDLIWRQFVACQMKDAQYL
STSITVAAGEFLLRTKGRVMKFEGYTKILPSFGKKDDDVILPDLQVGQSLDLKSLEPKQH
FTKPSPRYTEASLVKELEKRGIGRPSTYASIISTIQERGYVRLQNRRFYAEKMGDIVIER
LIESFDDLMDYGFTANMEETLDDVANGDKDWKGVLNNFYKGFTQQLEKAESPEGGMRENQ
PTETNIECPSCGRHMQIRTASTGVFLGCSGYSLPPKERCKSTINLILGDDVVSVDDDDEG
ESRLLRKKRRCSICDTAMDSYLIDEKRKLHVCGNNPDCSGYEVEQGVFKIKGYDGPSLEC
DKCGSEMQLKSGRFGKYFGCTNEGCKNTRKLLRNGEAAPPKMDPVQMPELACEKVEDTYV
LRDGAAGLFLAASKFPKNRETRAPLVSEILPHKDEIDEKYDFLFSAPVKDPDGRPSIIRY
SRKNKEQYVMTEVDGKASGWSAHYEGGKWVEAQVKKKKPAKKAVKKSSKKAAKSE
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactggttatagtcgagtctcctgcgaaagctaagacgattaataagtat
ctcggttccgagtttgtcgtgaagtcaagtgtgggtcatataagggacttaccgacaagt
gggtccgcaagcacatctacgcctgctgaaagggccaaagctgcggctaaaaccaggaag
atgagtcctgaggaaaaagccaagaacaaaaagcgcaaagcgaaagagcagcttattgcg
cgtatgggcgttaatccagaaaaagactgggcggccaactatcaggtattgcccggtaaa
gagaaagtggttaatgagctgcaacggcttgctaaaaccgctgataccatctatctcgca
acggatttggatagagagggagaagctatcgcttggcacttaatgcagtcgattggtggt
gatgaatcccgttatcgtcgagtggtgtttaacgaaataaccaaaaaagcgattcaagag
gcttttgaaacccctggtgagttagatcaatctagggtcaatgcgcagcaggctaggcgt
tttcttgatcgagtggtgggctttatggtgtcgccgctgctatggagtaaggttgctcgg
ggtttgtctgctggcagggttcagtcggtggctgtacgtttgattgttgagcgagagcaa
gagattagagcatttaatcctgaagagttttgggaggtatatgcagaccttctcgccaat
aaaaaggcctctacacgttttcaggtgaccaaatatcagaatgaaaacttccgccctgtc
agtgaagaagagacaaagcgctacaccgactttttaaatagtgctgcttacactgttgag
aagagagaagatcgcccgacaagctctaagccaaaccctccatttataacgtcaacgttg
cagcaggcagcgagcactcgccttgggtttagtgttaagaagaccatgatgctagctcag
aggctttatgaggcgggttatataacttacatgagaacagactcgactaatttaagtaaa
gaggctgtggaggcttgtagggcttatatcgataagagtgtggggttggagtacctaaac
gatcagccgcgcatttattcgagcaaagatggcgcgcaggaagctcacgaggcgatcaga
ccgtcaaatgttgaagtgatgggttttcaggtctcaggcttggagaaagatgccgagcgt
ctttatgatctgatttggaggcagtttgtagcttgtcagatgaaggatgcacaatattta
agtacctcgattacagtggcggctggtgagttccttttgcgcactaagggtcgagtgatg
aaatttgaaggttataccaagatactgccttcatttggtaagaaagatgatgatgttatt
ttgccagacttgcaggttgggcaatcccttgacctgaaatcacttgagccaaagcagcac
tttacaaagccatcacctcgatatactgaggctagcttggttaaagagctcgagaagcga
ggtattggtcggccttctacctatgcatcgattatctccacgattcaggagcggggttat
gtgaggttacagaatcgccgtttctacgcagagaagatgggtgacatcgttatagagcgc
ctaatcgagtcttttgatgatctcatggattatggctttaccgctaacatggaagagaca
ttggatgacgttgcaaatggcgataaagactggaaaggggtgctcaacaacttttataaa
gggtttacgcagcaacttgagaaggcagagtcacctgaaggtggtatgagagaaaatcag
cctaccgaaaccaatattgagtgccctagttgtggtcgtcatatgcagatcagaacagcg
agtacgggggtgtttctaggttgttccggttactcgttaccaccaaaagagcggtgtaag
agtacgatcaatctgatattgggtgatgatgtagtcagtgttgatgatgacgatgaaggg
gagtctcgcttactccgaaagaagcggcgttgcagtatttgtgataccgcaatggatagc
tatctgatagacgaaaaacgaaagctccacgtttgtggtaataatccagactgttcaggt
tatgaagttgagcagggtgtcttcaaaataaagggttatgatggtccatctcttgagtgt
gataaatgtggctcagagatgcagttaaaatcgggtcgatttggcaagtattttggttgc
accaatgaaggatgcaaaaataccaggaagctactgagaaatggtgaggctgcgccccct
aagatggaccctgttcagatgcctgagcttgcttgtgaaaaagttgaagatacctatgtg
cttagggatggggctgcaggtctgtttttagccgcaagtaagtttccaaaaaaccgagaa
actcgtgcgccgttagtgtcagagattctgcctcataaggatgagattgatgaaaagtat
gacttcctgttctcggcgccggtaaaagaccccgacggtaggccgtcaatcatacgctat
agccgtaaaaataaagaacagtatgtaatgactgaggttgatggcaaggctagtggttgg
tctgctcactacgagggtggtaaatgggtagaggcgcaagttaaaaagaaaaagccggct
aaaaaggcagtgaaaaagagttctaaaaaggctgctaagagcgagtag
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