Alkalimarinus sediminis: NNL22_07480
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Entry
NNL22_07480 CDS
T08621
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL22_07480 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asem03019
]
NNL22_07480 (rhlB)
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNL22_07480 (rhlB)
Messenger RNA biogenesis [BR:
asem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL22_07480 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZW76421
UniProt:
A0A9E8HTV2
LinkDB
All DBs
Position
complement(1665598..1667073)
Genome browser
AA seq
491 aa
AA seq
DB search
MLNKLFNLFCRLFQFLGLKPKRKTNEKSAKAGANQNKTHTKQAQKSKLDKKSSQVKPSAS
TNIKTKASQLESASHSGKAERKHEKPKAKVKKWTVDQFVVEPEEGKSRFHDFELDDRLMH
AIADLGFKYCSPIQAASLPYTLQGNDFIGKAQTGTGKTAAFLITTIQNFLLNPIPNEERY
ASEPRALIIAPTRELVMQIEKDAHLLTAHTDLQVYSVMGGIDYQKQRTHLRDKVVDILVA
TPGRLIDFLGSKDVFLDQVETLVIDEADRMLDMGFIPDVKRIIRHNKPVGERQTLLFSAT
FNDDVLNLVNNWTKDAQFIEIEAEQQTTDKVDQTVFMVSTDEKLTVICNYIQQNGVKRAI
IFGNRRDETRRLQETIRKLGIKCALLSGEVPQHKRIKTLEGFKNGDIQILVATDVAGRGI
HVDDVTHVFNYNLPEDPEDYVHRIGRTGRAGKEGKSISFACEDDAFLLPELEKYIGMKLD
CTYPDETLTQK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaacaaactttttaacctattttgtcgtctttttcagtttttagggttaaagcct
aaacgcaaaactaatgaaaagtcagcaaaagcaggtgctaatcagaataaaactcataca
aaacaggctcaaaaaagcaagctagataaaaagagctctcaagttaaaccaagtgctagc
acaaatattaaaaccaaggcatctcagcttgagtctgctagtcactctggaaaagcagaa
agaaagcatgaaaaaccgaaggcaaaggttaaaaaatggacagtggatcaatttgtcgtt
gaaccagaagaagggaagtcacgttttcacgatttcgagcttgatgaccgtttgatgcat
gctattgcagaccttggttttaaatactgtagcccgatacaagccgcatcgctaccttat
acgttacaaggtaacgattttatagggaaggcccaaacaggtactggaaagacagcagca
tttttaattaccaccatccaaaacttcttgttaaaccccatccccaacgaagagcgctac
gctagtgagccgagagcattaattattgcccctactcgtgagcttgtaatgcagatcgaa
aaagatgcacatttgctgacagcacatactgatctgcaagtctactcagtgatggggggg
atagactatcaaaagcagcgaactcacttgagagataaggtggttgatatattggtggct
acacctggccgtcttatcgatttcttaggtagtaaagatgtatttcttgatcaagtagaa
acgttggtaatagatgaagctgatcgcatgcttgatatgggctttattccagatgttaag
cgtattattcgccataacaaacccgtgggtgagcgacaaacattgttgtttagtgcgacg
tttaacgatgatgttctcaatcttgttaacaactggacaaaagatgctcagtttatcgag
attgaagcagagcagcagaccactgataaagtagatcagaccgttttcatggtctcaacc
gatgagaagctcacggtaatttgcaactacattcaacagaatggcgttaagcgcgcgatt
atttttggtaatcgtcgtgacgagactagacgattgcaagagacgatcagaaagcttggt
ataaaatgcgcgctattgtccggtgaagtgcctcaacataaacgtattaagacgcttgaa
ggttttaagaacggtgatatacagattctcgtagcaacggatgttgcgggtcgcggtatt
catgttgatgatgtaacgcacgtctttaactacaatctaccagaagatccagaagattat
gttcaccggatcggtcgcacaggcagagcgggtaaagaaggtaaatcaattagttttgct
tgtgaagatgatgccttcctactgccggagctagaaaagtatattggtatgaagcttgac
tgtacctatccagacgagacgctaacccagaaataa
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