Alkalimarinus sediminis: NNL22_08065
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Entry
NNL22_08065 CDS
T08621
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NNL22_08065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asem03400
]
NNL22_08065 (mfd)
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NNL22_08065 (mfd)
DNA repair and recombination proteins [BR:
asem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NNL22_08065 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZW76524
UniProt:
A0A9E8HL89
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All DBs
Position
1791552..1795019
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AA seq
1155 aa
AA seq
DB search
MTLKTLSIPALPSSPADHRQWGGVAAGFSPLLVLEAIKQHKGLGLLITPNTDTALTYETA
LKFFNDDRDLEVLNLPDWETLPYDNFSPHEDIISQRVETLYTLPSLKRGILIIPISTLLH
KLAPTSFLQGAGLLTSIGQTLNIDKYRLELEANGYRCVDTVYEHGEYAIRGSILDIYPMG
SEVPIRIELFDDEVETLRTFDTETQRSLEKIDRINLLPANEFPWDKNARLSFRTRWHDQF
ESAPTKDCSIYKDVQSGIKPPGIEYYLPLFFEESATLFDYLPGNTLIFTPPELHQISEHY
WSDILHRYEERRHDRLRPILPPEMLFVPTNELFAQLKQFPRVSIAQPLLEEAASVTNLDT
STLSDLSVDAKASDPLSKLRSFKDASATRILVCAESAGRREALEELFSDHKLAVQKVHNW
SDFQNSEAPLCLTIAPLSDGFIDPLRNITVISESELFGQRVMQRRRRKRATDSSEIAVKN
LSELRIGAPVVHIDNGVGRYQGLQTIEFDGQTNEFLMLEYAQGAKLYVPVSSLHLISRYS
GTDESLAPLHKLGSDKWSTAKQKAAEKIRDTAAELLDVYARREARVGFAASKPDDSYRAF
CAGFPFEETPDQAAAIEAVEHDMVNAKPMDRLVCGDVGFGKTEVAMRAAFIATNSGKQVA
VLVPTTLLAQQHYESFKDRFADTPVQVELLSRFRSTTEQNKALTAIKDGKADIIVGTHKL
IQKDVKFKDLGLVIIDEEHRFGVQQKERLKSLRSEVDILNLTATPIPRTLNMAMGGIRDL
SIIATPPARRLSVKTFVRQRDDATIKEAILRELLRGGQVYLLHNEVKTIDKAAEEIQALV
EEARVGVAHGQMRERELEQRMSDFYHKRFNVLVCSTIIETGIDIPSANTIIIERADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPNQKTVSPDATKRLEAISAAQDLGAGFMLATHDLEIR
GAGELLGDEQSGQIQSIGFTLYMEMLEQAVEAIKQGKTPDLEKPLKHGAEINLRIAALIP
EDYLPDVHNRLILYKRIANAKNKSELKELQVEMIDRFGLLPEQVKNLFRQTELKLAAEAL
GIIKLDAGATSGRVEFSSDTEVDPLTIIQLIQGSPAKYRLDGASALKFEIDQSDTDGKLK
EISQLLTTLSQSTNP
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaccttaaaaacactcagtatacccgctttaccttcttctcctgcagaccatcgacaa
tggggaggcgtagctgcaggcttctcgcctctattggtgcttgaggctataaagcagcat
aaaggtcttggcctattaataacacctaacactgatacagcgctaacatacgaaaccgcg
ctaaagttctttaacgatgatcgtgatttagaagtacttaatctacccgactgggaaacg
ctaccctacgacaacttctcaccccatgaagatatcatctcgcaacgggtcgaaacactt
tacaccttaccctccctaaagcggggaatactgattataccaatcagcacattactgcat
aaacttgctcctacttcgtttttacaaggtgcaggcttgttaacctcgattggccaaaca
cttaatatagataagtaccggctggagctcgaagctaatggataccgttgtgttgataca
gtttacgagcatggggaatatgctattagagggtcaattctagatatctatccgatgggt
agtgaagtccctatcaggatagaactttttgatgacgaagtggaaactctaaggactttt
gatactgaaacacagcgatcactggaaaaaatcgaccgcataaatctactccctgctaac
gagtttccttgggataaaaacgctcgcctatcttttcgaacacgttggcacgaccagttc
gaatcagcgcctaccaaagattgttcgatttataaggatgttcaatcagggatcaagcca
cctgggatcgaatattatctgccgctattttttgaagagagcgccaccctatttgactac
ctgcctggcaacaccttgatattcacccctccagagcttcaccaaatcagcgagcattat
tggagtgacatattacaccgctacgaagagcgaaggcatgacaggttaagacctattctt
ccacctgaaatgctatttgtaccgaccaacgaactgtttgctcaattaaagcagttccct
cgggttagcatcgcgcaacctttgttagaggaagcggcctcagtcaccaacttagatacc
tctaccttgagtgatttatcggtcgatgcaaaagcgtcagaccctctctcaaaattgcga
tcatttaaagacgcatcagccacacgcattctagtttgcgctgagtctgccggcagaaga
gaagcccttgaagaactattttcagaccacaaattggctgttcagaaagttcataactgg
agcgatttccagaatagtgaagccccactctgcttaactattgcaccactatcagatggg
tttattgacccactaagaaatattaccgttatttctgaatcagagctttttggccagcgt
gttatgcaaaggcgcagacgcaagcgagccacagactctagcgagatagcggttaagaat
ctatcagaattaagaataggagcccctgtcgtacatatcgataatggtgttggccgctat
caaggcctacaaaccattgagtttgacggacaaaccaatgaatttttgatgctagaatac
gcacagggcgcaaaactatacgttccagtctcttcgttgcatctaatctctcgttatagc
ggcacagatgagtcgttagcaccgctccacaaattaggcagcgataaatggtcaacagcc
aaacaaaaagcggcagagaaaataagagatacagccgctgagctgctcgatgtttatgca
aggcgcgaagcccgagtaggctttgctgcctcaaagcccgatgatagctatagagctttc
tgtgcaggcttcccatttgaagagacgccagaccaagcggccgcaatagaagccgttgag
cacgatatggtgaacgcgaaaccgatggatcgtctagtatgcggcgatgtgggtttcggt
aaaacggaagttgcgatgcgagctgcatttatagccacaaattcaggcaagcaggttgca
gttctggtacccacaacgctccttgcgcaacaacactacgaatccttcaaagatcgcttt
gcagacacgcccgtacaagttgagctactatctcgttttcgcagcaccacagagcaaaac
aaggcgttaaccgcgataaaagatggaaaggcagacattatagttggcacccataaactg
attcagaaagatgttaaatttaaagacctagggctggttatcatagatgaagagcatcgt
tttggtgttcagcaaaaagagcgcttaaagtcactgcgttcagaagttgatatcctaaat
ctaacggccacacctattccgagaacactaaatatggcgatgggagggattcgagatcta
tcgattattgcgacacctcccgctagacgtttatcggttaaaacgttcgttcgtcagcgt
gatgacgccaccataaaagaagcgattcttagggaacttcttcgcggcggccaggtatac
ctgttgcacaatgaagttaaaaccatcgacaaagctgctgaagagattcaagcgttagta
gaagaagcccgagtaggtgttgcgcacggccagatgcgagagcgcgaactcgaacagcgg
atgtcagacttttaccataaacgctttaatgtattggtctgttccaccattatcgagacc
ggtatcgatatcccaagtgctaataccattataattgagcgagccgataagtttggtctt
gctcaactccatcaacttaggggtcgagtggggagatctcaccaccaagcttatgcatat
ttgctaactcccaatcaaaaaaccgtatcacctgatgcaaccaagcggcttgaagcaata
tccgcagcacaagacttgggcgcaggctttatgctagcaacccacgacctagaaatacga
ggcgccggagaactgctcggtgatgagcagagcggtcaaatacagagcatcggttttact
ctttacatggagatgctggaacaagccgttgaagcaattaaacaaggcaaaacacctgat
cttgaaaaaccattaaaacacggagccgaaatcaacctaagaattgccgcgctcattcca
gaagactacttgcctgacgtgcataaccgtctaattttgtataaacgcattgcaaacgct
aaaaacaaatcagagttaaaagaattacaagtcgagatgattgaccgctttggtctgctc
cctgaacaagtgaaaaatctattcaggcaaacagaacttaaattagcagccgaagcactg
ggtattattaagctagatgctggcgctacctcgggtagagttgagttttcaagtgacaca
gaagttgacccgcttactatcattcagctgatacaggggagtccagcgaaatatcgactg
gatggcgccagtgcacttaaatttgagatagaccaaagcgatacagatggtaaacttaaa
gaaattagtcagttgcttaccaccttgagccagagcactaacccataa
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