Alkalimarinus sediminis: NNL22_11310
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Entry
NNL22_11310 CDS
T08621
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL22_11310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asem03019
]
NNL22_11310
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NNL22_11310
Messenger RNA biogenesis [BR:
asem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL22_11310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UZW73626
UniProt:
A0A9E8KI66
LinkDB
All DBs
Position
complement(2550303..2551556)
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AA seq
417 aa
AA seq
DB search
MDFSSLGLNEQLVAAVSALGYQTPTPIQIGAIPAILTQQDVMAGAQTGTGKTAAFALPIL
HTLSKSAPSEGSQVDSFRTIKALILTPTRELAQQVHTSFLEYGSNINLQTKIAYGGASLN
PQIKSLKQGADILVATPGRLLDLMFKGVVKLDQLQVLVFDEADRMLDMGFSDEINRILKH
IPSSRQTLLFSATFDQAIFDLSKTLLKSPKLIEVDSRNTAATQVEQIVYEVDTDRKRELT
SYLIGSKNWHQVLIFTRTKQGADELAREMCKDGIKTQSIHGDKSQGARDRVLGEFKQGKI
RALVATDVAARGLDIEQLGYVINYELPFIPEDYIHRIGRTGRAGASGLAISLLSPDENWL
LEEIEAILDARLPQQWLPGYEPDLTKEQPVSRKNTRTAQKRRSKQRAFGKRTANRRG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcttctttaggtctcaacgagcagttggtggcggcagtctcggcccttggt
taccaaacgcctacccctattcagataggtgctattcctgcgattttaactcagcaggat
gttatggctggagcccaaacaggtacgggtaaaactgcagcttttgcgctacctattctc
cacactcttagtaagtcagctccgagcgaaggttctcaggtagatagctttcgcactatt
aaggcactgattttaacgcctacccgagagctcgctcagcaggttcatactagctttttg
gagtatggcagcaacattaacctgcaaaccaaaatcgcttatgggggtgctagtctaaac
cctcaaattaagtcgttgaaacagggcgcagatatattggtagcaacaccagggcggctg
cttgacctcatgttcaaaggggtcgtcaagctagatcagttgcaggttctagtgtttgat
gaagctgaccgcatgctggatatggggttcagtgatgagattaatcgaatcttgaaacat
ataccgtcatctcggcagacacttctcttttctgccactttcgaccaggcaatttttgat
ttgagtaagacgctgcttaaatccccaaaactgattgaggtggatagtcgcaacactgcg
gctactcaggtggagcaaatagtgtatgaggttgatactgatcgtaagcgagagctaact
tcgtaccttataggttcaaaaaattggcatcaagtattgatttttacacggacgaagcag
ggggcagatgagttggcccgagagatgtgtaaggatggtattaagacccaatcgattcat
ggtgataagtcccaaggtgctcgtgaccgtgtattgggggaatttaaacaaggcaagatt
cgtgctttagttgcaactgatgtagcggctagagggttggatatcgagcaattaggctac
gttattaactatgagttgccatttattcctgaggactatattcatcgaatagggcgtaca
ggtagagcaggcgcttctggcttggctatctctttgttaagtccggatgaaaattggtta
ctagaagagatagaggcaattttagatgctcgattgccgcagcagtggttacccggctac
gaacccgacttaactaaagagcagcctgtgtcgcgcaagaatactcggacagcgcaaaag
cgccgctctaaacagagggcgtttggcaagagaactgctaatcgccgtggttaa
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