Alkalimarinus sediminis: NNL22_14880
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Entry
NNL22_14880 CDS
T08621
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNL22_14880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asem03019
]
NNL22_14880
03400 DNA repair and recombination proteins [BR:
asem03400
]
NNL22_14880
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NNL22_14880
Messenger RNA biogenesis [BR:
asem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNL22_14880
DNA repair and recombination proteins [BR:
asem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NNL22_14880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DDE_3
HTH_19
Motif
Other DBs
NCBI-ProteinID:
UZW74293
UniProt:
A0A9E8HGL4
LinkDB
All DBs
Position
complement(3360163..3362100)
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AA seq
645 aa
AA seq
DB search
MTADLHALLQQHFGFASFRPGQAEVVHAIAEGRSAAAIFPTGSGKSLCYQLSALHLPDLT
LVVSPLLALMQDQLKFLAQKGIAAASIDSTQSREASVEVMNGVRAGQIKILMVSVERLNN
ERFRNFMSQVPISLLVVDEAHCISEWGHNFRPDYLKLPQYRQEFNINQTLLLTATATPQV
IQDMGQKFGIQSNDVILTGFYRANLNLAVQGVKTEDKVDCLAEWLNGRIHQSGIVYVTLQ
QTAEQVAEQLRQRNIAAHAYHAGMDSERRQAIQQQFMAGELGIIVATIAFGMGIDKSDIR
FVVHYDLPKSIENYAQEIGRAGRDGNPSDCLVLANGDNLNVLENFVYGDTPERAAIDHVL
SDISQSAAQGGRQWEMVLNSLSSQSNIRPLSLKTLLVYLEIFNIIKPVYSYFAEYKYKFL
QPQEEVVARFKGERQDFVNAIFDSSDKARTWATVNFERLNQCYPSERTRALTALEYLDEQ
GLIELQTKQMTQVYDVVNPHFEQASLVASLDERFRTKEQSEISRIHQLVAFFTSDSCLSR
QLAEYFADHQLQTNCGHCSVCSGAPASLPPLPNLPPLEQYDYAGLSQQITEKLGGAATIV
LISRFLCGLTTPIFTRLKARALTGFAALEQYRFSDVKAWVAHHRE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgatcttcacgcactattacaacagcactttggttttgcctcttttcggcct
ggtcaggcagaggtagtccacgccattgcagagggtagaagtgccgcggctatttttccg
accggctcgggtaagtcgttatgttatcagttgtcagcactgcacttaccagatcttacc
ttagtggtttcgcctctgctggcgctcatgcaagatcagctcaaatttctggctcaaaaa
ggcatcgcggcagcaagtattgattcaacccagagtagggaagcctctgtggaggtgatg
aatggtgttcgagcaggtcagataaaaattctaatggtgtcagtcgagcgactgaacaac
gaacgctttcgtaattttatgagccaagtgcctatctcgctattggtggtggatgaagct
cactgtatttcagaatgggggcataactttcggccagattatttaaagctaccgcaatat
cgtcaagaatttaatatcaaccaaacccttcttttaacggcgacggcaacaccccaagtc
attcaagatatggggcaaaagtttggtatccaatcgaatgatgtgatcttaacgggcttc
tatcgtgccaacctcaatttggctgttcaaggtgttaaaacagaagataaagtcgactgc
ttggcagagtggcttaacggtcgcattcatcagtcgggtattgtctatgtgacgctgcag
caaacagccgagcaggtggcagagcaacttaggcaacgcaatatagccgcacacgcctat
catgcgggtatggatagcgagcgacgccaagcgattcagcagcaatttatggcgggtgag
ttaggtattattgttgcgaccatcgcctttggaatggggatcgataaaagtgatatccgc
tttgttgtgcattacgacctgcctaaatctatcgaaaattatgcacaagagatcggtcgc
gccggacgagatggcaatccttcagactgtttggtattagccaatggcgataaccttaat
gtactcgaaaactttgtttatggtgataccccagaacgagctgctattgatcatgtgttg
agtgacatctcgcaaagtgctgctcaaggaggtcggcaatgggagatggtgctgaacagc
ttatcgagccaatcgaatatacggcctctcagtcttaaaactttgctggtctatctcgaa
atttttaacatcatcaaacctgtttatagctactttgcggaatataaatacaagtttctg
caacctcaagaagaggtagttgcccgttttaaaggtgagcggcaggactttgttaacgcg
atttttgattcatctgataaagccagaacctgggcaacggtgaattttgagcgactcaac
cagtgttacccaagcgaacgcactcgcgcactcaccgcattagagtatcttgatgaacag
ggcttgattgagttgcagaccaaacagatgactcaggtgtatgatgtggttaaccctcac
tttgagcaggcatcactagtagcatctctcgatgagcgattccgtaccaaagagcagagt
gagatcagccgtattcatcaactggtcgccttttttaccagcgatagttgtttaagtcgt
cagcttgccgagtattttgccgaccaccaattacaaacaaattgtggtcattgctctgtt
tgcagtggtgcccccgcatctttaccaccactacccaatctaccgccacttgaacaatat
gattatgccggtttaagccaacaaattaccgaaaaactaggtggtgcggcgaccatagta
ttaatcagtcgttttttatgtggccttactacccccatttttacgcgcctaaaagcccgc
gctttaaccggctttgctgcacttgaacaataccgcttttcagatgttaaagcctgggtg
gcgcatcatcgtgagtga
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