Alkalimarinus sediminis: NNL22_15680
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Entry
NNL22_15680 CDS
T08621
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
asem
Alkalimarinus sediminis
Pathway
asem03420
Nucleotide excision repair
asem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NNL22_15680 (uvrD)
03430 Mismatch repair
NNL22_15680 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asem03400
]
NNL22_15680 (uvrD)
Enzymes [BR:
asem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NNL22_15680 (uvrD)
DNA repair and recombination proteins [BR:
asem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NNL22_15680 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NNL22_15680 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
DEAD
Motif
Other DBs
NCBI-ProteinID:
UZW74445
UniProt:
A0A9E8HGW8
LinkDB
All DBs
Position
complement(3542159..3544327)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSHILDSLNDEQRQAVAAPMRNLLVLAGAGSGKTRVLVHRIAWLMEIERLTPTSIMAV
TFTNKAAKEMRGRIEKLLDLPPRGLWFGTFHGIAHRLLRAHWRDANLPENFQIIDSDDQL
RVIKRVMRDLQLDETKWPPRQAQSFINAQKDEGIRAEYIEATSDLYMRTMAQVYKGYEEQ
CQRSGMVDFGELLLRSHEVWLNNPQLLAHYQERFRHILVDEFQDTNTIQYAWLRVLAGNR
IPLTVVGDDDQSIYGWRGAKIENIQHFQNDFADSMQVKLERNYRSTSTILDAANGLIANN
GSRLGKQLWTEENEGEPIDLYSAFNEQDEANYVADCIDDWVKKGNLRSDVAILYRSNAQS
RVIEDAFIRQQVPYRVYGGLRFYDRMEIRNALAYIRLVHYRHDDAAVERVINVPPRGIGN
KTISDIRDHARNESVTLWQACNEMISLGSLRGRAANAVQKFIDVIEDLADGATDLPLHTL
VEKVINESMLKEFHGSEKGEKGQARVENLNELINATRDFEADDEEMEPLSAFIAQAALDA
GENQAEEHEDSVQMMTLHSAKGLEYPLVFMVGMEEGLFPHSRSAEEPGRIEEERRLCYVG
ITRAMEKLVMTHAETRRLYGQEKYHAVSPFIREIPASLIQEVRLKNTVTRPVSFQRANDE
SWATAASSEAAFQLGQLVSHPIFGEGTVLNYEGQGPHARIQVNFLSEGSKWLVMSYAKLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcccatattcttgactccctaaatgatgagcagcgacaggctgtagcagca
cctatgcgaaacctgttggttttggcgggggcaggaagcggaaaaactcgtgtgctagtg
caccgtattgcatggctgatggaaattgagcgccttacgcctactagcatcatggcggtg
acgtttactaataaagcagcaaaagagatgcgcgggcggatcgagaagctattagacctg
ccgccgagaggtttatggtttggcacctttcacggaatagctcaccgcttgctaagagcc
cactggcgagatgctaaccttcctgagaactttcagattatagattctgatgatcagctt
agggttatcaagcgcgttatgcgagaccttcaattagatgaaacaaagtggccgccgcga
caagctcagtcgtttattaatgctcaaaaagatgaaggcatacgcgctgaatatatagag
gccactagcgatctctatatgcgcaccatggcgcaagtctataaaggctatgaagagcag
tgtcagcgttctggtatggttgattttggtgagcttctacttcgctcacatgaggtttgg
cttaataaccctcaactgttggcacattaccaagagcgatttagacatattttggttgat
gagtttcaagataccaataccattcaatatgcgtggctcagagtattggcaggtaatcgg
attccgttgaccgtcgtaggggatgatgaccagtcaatttatggctggcgaggcgccaag
atagaaaatatccagcacttccaaaacgactttgccgattcgatgcaggtaaaactagag
cgcaactatcgctcgactagcactattctggatgctgcaaacggcttgatcgccaacaat
ggcagccgcttaggtaaacagctatggactgaagaaaatgaaggcgaaccgattgatctc
tattctgcctttaatgagcaagatgaagcaaactatgttgccgactgcatcgatgactgg
gtcaaaaaaggtaacctcagatcggatgtggccatactttatcgctcaaatgcccagtcg
cgggtgatagaagatgcctttattcgacagcaggtcccttatcgggtttatggcgggctt
cgtttttatgatcgaatggaaatcagaaatgcgctcgcctatattagactggttcactat
cgtcatgatgatgcagccgtcgagcgggttattaatgtgcctccgagggggattggtaac
aaaaccatctctgatattcgtgatcatgctcgaaatgagtcggtcacactttggcaagcc
tgtaatgagatgatctcgttaggtagcttgagaggtagagctgccaacgcagtacaaaaa
tttattgatgtaatcgaagatttagctgacggtgcaactgatttgccgctacatactcta
gttgaaaaagtgatcaacgaaagcatgttaaaagagtttcatggtagtgagaagggtgaa
aaaggccaggctcgggtagagaacttaaatgaactgattaacgcaacccgagacttcgaa
gcagatgatgaagagatggagccgctttctgcctttattgcccaagctgcgcttgatgca
ggcgaaaatcaggctgaagagcatgaagatagcgtgcaaatgatgacgcttcactctgct
aaaggtcttgagtacccgcttgtctttatggtgggtatggaagaggggttattccctcat
agtcgctctgcagaagagccaggcagaatcgaagaagaacggcgactctgttatgtgggt
atcacccgcgcgatggagaagttggtaatgactcacgccgaaactagaaggctgtatggg
caagaaaaataccatgctgtatcaccctttattcgcgaaataccggcatcattaattcag
gaagttcgattaaagaataccgtaacgcggccagtgagctttcagcgtgctaatgatgaa
agttgggccactgcagcatcaagcgaagccgcgtttcaattaggacagttggtgagccat
ccaatttttggagaggggacggttttaaattatgaaggtcaggggcctcatgccagaatt
caggttaacttcctcagtgaagggagtaaatggttagttatgtcatatgctaagttggag
gcattataa
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