Alistipes senegalensis: NQ519_01005
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Entry
NQ519_01005 CDS
T08441
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asen
Alistipes senegalensis
Pathway
asen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ519_01005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asen03019
]
NQ519_01005
Enzymes [BR:
asen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NQ519_01005
Messenger RNA biogenesis [BR:
asen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQ519_01005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
ERCC3_RAD25_C
SPECT1
Motif
Other DBs
NCBI-ProteinID:
UWN65442
LinkDB
All DBs
Position
complement(263721..265166)
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AA seq
481 aa
AA seq
DB search
MRFDELDLEDEILDGLEDMNFHEMTPVQEHTIPVILDGRDIIGCAQTGTGKTAAYTLPLL
NKLLLEGNPDNVVKSLIIVPTRELAQQIDQQFQGFSYYAPISTTVVYGGGDGKGWDIQKK
GMLSGSDVVIATPGRMIAHLQNSGVDLSHVEYLILDEADRMLDMGFSEDIMKIVSYMPRE
RQTIMFSATLPPKIRELAKTILRNPAEVNIAISKPNEAIDQSAYICYENQKLGIIRELFA
EPTDSKTIIFSSSKLKVKELAHTLKRMKLDVAAMHSDLEQAQREEVMLNFKNNKVKILVA
TDIVARGIDIEDIGLVLNYDVPHDPEDYIHRIGRTARAAATGSAVTFVSEEEQGKFHQIE
KFIERDIRKAELPESVGEGPKYAPDENRGRFGRGGRSGGRSGGRGRGGRGDRSGRNDRNR
RSERPAAGDAASAAAQPASPDSDHASGRGEGNRGTRDRRRHRGGRNRRRKTPVSGGESSQ
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcgatgaactcgatctggaagatgaaattctcgacggtctcgaagatatgaac
ttccacgagatgactcccgtgcaggagcatacgattccggtgattctggatggccgcgac
attatcggctgcgcccagaccggaacgggaaagaccgcggcctatacgctgccgctgctg
aacaaactgctgttggaagggaatcccgacaatgtggtgaaatcgctgatcatcgtgccc
acgcgcgagctggcgcagcagatcgaccagcagttccagggtttttcctactatgccccg
atctcgacgacggtcgtctacggcggcggcgacggcaagggctgggacatccagaagaaa
ggcatgctgagcggttccgacgtggtgatcgccactccgggccgcatgatcgcccatttg
cagaacagcggcgtggacctttcgcacgtcgaatacctcattctcgacgaggccgaccgc
atgctggacatgggtttctcggaggacatcatgaagatcgtttcgtacatgcccagggag
cggcagacgatcatgttctcggccacgctgcccccgaagatccgcgagctggccaagacc
atcctgcgcaatcccgcggaggtcaacatcgccatttcgaagcccaacgaggccatcgac
cagtcggcctacatttgctacgagaatcagaagctgggcatcatccgcgaactgttcgcc
gagccgaccgattcgaaaacgatcatcttctcgtcgtcgaagctcaaggtcaaggagctg
gcccatacgctcaaacggatgaaactcgacgtggcggccatgcactccgacctggagcag
gcccagcgtgaggaggtgatgctcaatttcaagaacaacaaggtcaagatactcgtcgcc
acggacatcgtcgcccggggcatcgacatcgaggacatcggtctggtgctcaactacgac
gtgccgcacgatcccgaggattacatccaccgcatcggccgtacggcccgcgcggcggcc
acgggcagcgccgtgacgttcgtcagcgaggaggagcagggcaagttccatcagatcgag
aagttcatcgagcgcgacatccgcaaggctgagcttcctgaaagcgtgggtgagggaccg
aaatacgctcccgacgagaaccgcggccgtttcggacgcggaggacgtagcgggggacgt
tccggcgggcgtgggcgcggcggacgcggtgaccgttcggggcgcaatgaccggaaccgc
cgcagcgaacgcccggcagccggggacgcggcttctgccgccgcacagcctgcctccccg
gacagcgatcacgcttcggggcgcggcgagggcaaccgcggcacgcgcgaccgccgtcgt
caccgcggcggacgcaaccgccggcgtaagacgccggtttcagggggcgagagttcgcag
cagtaa
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