Alistipes senegalensis: NQ519_03685
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Entry
NQ519_03685 CDS
T08441
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asen
Alistipes senegalensis
Pathway
asen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ519_03685 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asen03021
]
NQ519_03685 (rpoC)
03400 DNA repair and recombination proteins [BR:
asen03400
]
NQ519_03685 (rpoC)
Enzymes [BR:
asen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ519_03685 (rpoC)
Transcription machinery [BR:
asen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ519_03685 (rpoC)
DNA repair and recombination proteins [BR:
asen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ519_03685 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Tom22
Motif
Other DBs
NCBI-ProteinID:
UWN65952
UniProt:
A0ABY5V8Z2
LinkDB
All DBs
Position
complement(949282..953541)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSITKDNKPNNGYSRISIGLASPEEILAQSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVVHIWYFRSLPSKI
GYLLGIPSKKLEAIIYYERYVVINAGAASEQGIERLATLSEKEYLDVLAALPKGNQSLDD
SDPNKFVAMMGAEAIYTLLKQVDLDSMSYSLRHKASTETSQQRKSEALKCLNVIESFRAS
EGKNKPEWMVLNVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSNAVKNESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHEMGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDRKDPVI
WGILENVIKGHPVLMNRAPTLHRLGIQAFQPKLIEGKAMQLHPLACTAFNADFDGDQMAV
HLPLGNAAILEAQLLMLGSHNVLNPANGAPITVPSQDMVLGLYYITKPRKGVKGEGRVFY
GAEEAIIAYNEGRADLHAIVKCMVDDLDEQGNEVRVLKETTIGRILFNQVVPKEVGYINE
ILTKRSLRDIIAVVMKKAGADKVAAFLDDIKNMGYQMAFQGGLSFNLDAVIIPQEKEKLV
QEGYERSDAIMEDYNMGLITNNERYNQIIDVWTNINTKLTKAVIETLIKDNDGFNPVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGVEGGQQVIENPILSNFKEGLSVLEYFISTHG
ARKGLADTALKTADAGYLTRRLVDVAQDVIINEEDCGTLRGLTATAIKRNDDVVQTLYDR
ILGRVALNDVIHPLTGEVICKAGEEITESIAEAIEKSPLESVEIRSVLTCESRRGVCAKC
YGRNLATARMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGVAGGTAVETNVVSKYEGRL
EIDELRTVKGKNAAGESIDIVISRQSEFRIVDPKTEIVLYTHNLPYGSTLFMEDGAEVKK
GDLICEWDPYNAVIISEYEGRAVYDSVIEGVTYRDERDEQTGLSEKVVIESKDKTKNPVI
KIVDKEGLEVKQYNLPVGAHVVVKDNAKIKAGDILIKIPRAVGKSGGDITGGLPRVTELF
EARNPSNPAIVSEIDGEVSFGKIKRGNREIVITSKQGDVKRYLVPLSRQIIVQENDYVKA
GSPLSDGAITPSDILNILGPTKVQEYIVNEVQEVYRMQGVKINDKHFEVIVRQMMNKVKI
EDPGDTRFFEDQIIDKWEFMDVNDELYDKVVVTDAGDSTLLQPGQIVSLRKLRDENSSLK
RRDQRPVQVRDIVPATSTQVLQGITRAALQTSSFISAASFQETTKVLNEAAIQAKVDPLE
NLKENVICGHLIPGGTGLRDYDDLVVGSKADFESLQQAQ
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattaccaaagacaataaaccgaataatggttacagccggatttcgatcggcctg
gcctctcccgaggagattctggcccagtcgagcggcgaggtgctgaagcccgagaccatt
aactaccgtacctacaagcccgagcgcgacggtctgttctgcgagcgcatcttcggtccg
gtgaaggattacgagtgccattgcggtaagtacaagcgcatccgttacaagggcatcgtc
tgcgaccgctgcggcgtggaggtgaccgagaagaaggtgcgccgcgagcgcatgggacac
atctcgctggtggttccggtggtgcatatctggtatttccgttcgctgccttcgaagatc
ggctacctgctgggcattccgtcgaagaagctcgaagcgatcatctactacgagcgttac
gtcgtgatcaacgccggcgccgcttccgagcagggcatcgagcgtctggccacgctttcg
gagaaggagtatctcgacgtgctggccgcgctgccgaagggcaatcagtcgctggacgat
tcggaccccaacaagttcgtcgccatgatgggcgccgaggcgatctatacgctgctgaag
caggtggacctcgattcgatgtcctactcgctgcgtcacaaggcttcgaccgagacttcg
cagcagcgtaagtccgaggcgctgaagtgtctgaacgtcatcgagtcgttccgcgcttcg
gagggcaagaacaagcccgagtggatggtgctgaacgtgattccggtgattccgcccgag
ctgcgcccgctggtgccgctggacggcggacgtttcgccacgtcggatctgaacgacctc
taccgccgcgtcatcatccgcaacaaccgtctgaaacgcctgatcgaaatcaaggctccg
gaagtgattctgcgcaacgagaagcgcatgttgcaggaggccgttgattcgctgttcgac
aactcgcgcaagtcgaatgccgtgaagaacgagtcgaaccgccccttgaagtcgctttcc
gactcgctcaagggcaagcagggccgtttccgtcagaacctgctgggtaaacgtgtcgat
tattcggcccgttcggtgatcgtcgtcggccccgagctgaagatgcacgagatgggtatt
ccgaaggacatggccgccgagctctacaagccgttcgtgatccgcaagctcatcgagcgc
ggcatcgtgaagacggtgaagtccgcgaagaagatcatcgaccgcaaggaccccgtgatc
tggggcattctggagaatgtcatcaagggacaccccgtgttgatgaaccgcgccccgacg
ctgcaccgactgggtattcaggcgttccagcccaaactgatcgagggcaaggccatgcag
ctgcacccgctggcatgtacggcgttcaacgccgacttcgacggcgaccagatggccgtg
cacctgccgctgggcaatgccgccattctggaggcccagttgctgatgctgggttcgcac
aacgtcctgaaccctgcgaacggtgcgcctatcacggtgccttcgcaggatatggtcctc
ggtctttactacatcaccaagccccgcaagggcgtgaagggcgaaggccgggtgttctac
ggcgccgaggaggcgatcatcgcctacaacgagggccgtgccgacctgcacgccatcgtg
aagtgcatggtcgatgacctggacgagcagggcaacgaagtgcgcgtgctgaaggagacg
accatcggccgcatcctcttcaaccaggtggttcccaaggaggtcggctatatcaacgag
attctgacgaagcgttcgctgcgcgatatcatcgccgtcgtgatgaagaaggccggtgcc
gacaaggtggccgcattcctcgacgacatcaagaacatgggttatcagatggccttccag
ggcggtctgtcgttcaacctcgatgccgtgatcattcctcaggagaaggagaagctcgtg
caggagggctacgaacgttcggacgccatcatggaggactacaacatgggtctgatcacc
aacaacgagcgttacaaccagatcatcgacgtttggacgaacatcaacaccaagctgacg
aaggccgtgatcgaaacgctgatcaaggacaacgacggtttcaatccggtgtacatgatg
ctcgactccggagcccgtggttcgaaggagcagatccgtcagctgagcggtatgcgcggt
ctgatggccaagccgcagaaatcgggtgtcgagggcggtcagcaggtcatcgagaacccg
atcctctcgaacttcaaggagggactttcggtgctcgagtacttcatctcgacccacggt
gcccgtaagggtcttgccgacaccgccttgaagacggccgacgccggttatctgacgcgt
cgtctggtggacgtggcgcaggatgtcatcatcaacgaggaggattgcggcacgctgcgc
ggcctgacggctacggccatcaagcgcaacgacgacgtggtgcagaccctctacgaccgt
attctgggccgtgtggctctgaacgacgtgatccatccgctgacgggcgaggtgatctgc
aaggccggcgaggagatcaccgagtcgatcgccgaggccatcgagaaatcgccgctggag
tcggtggagatccgttcggtgctgacctgcgagtcgcgccgcggcgtctgcgcgaagtgc
tacggccgcaacctggccacggcccgcatggtccagaagggcgaggtcgtcggcgtcatt
gccgcgcagtccatcggcgagccgggtacgcagctgaccctgcgtacgttccacgtcggc
ggtgtggccggcggcacggctgtcgagaccaacgtcgtttcgaaatacgaaggccgtctg
gagatcgacgagttgcgcaccgtcaagggcaagaacgcggccggcgaatccatcgacatc
gtgatctcgcgtcagtcggagttccgcatcgtcgatcccaagaccgagatcgtactctat
acgcacaacctgccctacggctcgacgctcttcatggaggacggcgccgaggtcaagaag
ggcgacctgatttgcgagtgggacccgtacaacgccgtcatcatttcggagtacgagggc
cgcgccgtctacgacagcgtcatcgagggtgtcacctaccgcgacgagcgcgacgagcag
acgggtctgtcggagaaggtcgtgatcgagtcgaaagacaagaccaagaaccccgtcatc
aagatcgtcgataaggagggcctcgaagtcaagcagtacaacctgcccgtgggcgcccac
gtcgtcgtgaaggacaacgccaagatcaaggccggcgatattctcatcaagattccgcgt
gccgtcggcaagtcgggcggcgacatcaccggtggtctgccgcgtgttacggagctcttc
gaggcccgcaacccgtcgaatcccgccatcgtttcggagatcgacggcgaggtttcgttc
ggcaagatcaagcgcggtaaccgcgagatcgtcatcacctcgaagcagggcgacgtgaaa
cgctatctggtgcccctgtcgcgtcagatcatcgtgcaggagaacgactacgtgaaggcc
ggcagcccgctgtcggacggcgcgatcactccgagcgacatcctcaatatcctcggtccg
acgaaggtgcaggagtacatcgtcaacgaggtgcaggaggtgtaccgcatgcagggtgtg
aagatcaacgacaagcacttcgaggtcatcgtccgccagatgatgaacaaggtgaagatc
gaggacccgggagacacccgtttcttcgaggatcagatcatcgacaagtgggagttcatg
gatgtgaacgacgaactgtacgacaaggtggtcgtgaccgacgccggcgattcgacgttg
ttgcagcccggacagatcgtgtcgctgcgcaagctgcgcgacgagaattcgagcctcaaa
cgccgcgatcagcgtccggttcaggtgcgcgacatcgtgcctgcgacctcgacccaggtg
ttgcagggtatcacgcgcgccgcattgcagacttcgagcttcatttcggcggcttccttc
caggagaccaccaaggtgctgaacgaggcggccatccaggccaaggtcgatccgctggag
aacctgaaggagaacgtgatctgcggtcacctgatccccggcggtacgggtctccgcgat
tacgacgacctcgtggtcggttcgaaagccgatttcgagtcgctccagcaggctcagtag
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integrated database retrieval system
