Alistipes senegalensis: NQ519_10040
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Entry
NQ519_10040 CDS
T08441
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asen
Alistipes senegalensis
Pathway
asen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ519_10040 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asen03019
]
NQ519_10040 (rnr)
03016 Transfer RNA biogenesis [BR:
asen03016
]
NQ519_10040 (rnr)
Enzymes [BR:
asen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NQ519_10040 (rnr)
Messenger RNA biogenesis [BR:
asen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ519_10040 (rnr)
Transfer RNA biogenesis [BR:
asen03016
]
Prokaryotic type
tRNA degradation factors
NQ519_10040 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_Dis3
OB_RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
UWN64108
UniProt:
A0ABY5V3Z7
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All DBs
Position
complement(2556738..2558978)
Genome browser
AA seq
746 aa
AA seq
DB search
MKKQNQRSGKGARKTDRASVILSLLREFPNNKFSLKHLASASGGASKEGRRETLEILDRL
FEEGIVEECAREKYRLTQKHLPHYEGVADMTPSGSVYVKVEGLEADIFVNQRNAANALNG
DRVEVVAMHRGRNGQMEGEITRIIERNRKPYVGVAEVGAHQIFVRADSRRMPMDIYLSKR
TWPDIRNGEKVVVRIVDWQPGSKSPEGELVERLGMAGNNDTEMHAILAEYELPYRFETEV
EEAAEAIDARVTGKEIAERRDFRQVVTFTVDPADAKDFDDALSVRKIKDGVWEIGVHIAD
VTHYVRPHSVIDDEAVERGTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNE
NLEILEEWFGRTVIHSDRRFTYAEAQEIIETGRGDYAEEVLTLNRLAQALRAERFKNGAI
SFDREEVKFKLDENGKPLGVYFKEQKESNQMIEEFMLLANRRVAEFCGKRRTESGRTTAR
TMVYRVHDSPSEEKLDRFRQFILRFGHIFKATKGRAVAKEMNKLFKQIKGTTEENAVSTM
AVRSMAKAYYTTDNIGHYGLAFPYYTHFTSPIRRYPDMMVHRLLARYLAGGKSADKTELE
ELCARASEREVVAAEAERASIKYKMVEFMKEHIGEEFEGHISGLTEWGVYVELDETHIEG
MSFLRDIEGDFFQFDEQLYEIIGRSTGIRLTLGSPVRIRVKRADLQKRQLDFEVLLPDAA
TRRAAAASEGRGKGPKVRTSSRRKGK
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacagaaccaacgctccggaaaaggagcccggaaaacggaccgcgcatcggtc
atactgagcctgctgcgcgaattccccaacaataaattctcgctgaaacacctcgcttcg
gcgtcgggaggcgcctcgaaggagggccgccgcgaaacgctcgaaatcctcgaccgcctc
ttcgaagaggggatcgtcgaggagtgcgcccgcgaaaaataccgcctcacccagaagcac
ctgccccactacgagggcgtggccgacatgaccccctcgggttcggtctacgtgaaggtc
gagggactggaagccgacattttcgtcaaccagcgcaatgcggccaatgccctgaacggc
gaccgcgtggaggtcgtggcgatgcaccgcggccgcaacggacagatggagggagagatc
acccgcatcatcgaacgcaaccgcaagccctatgtgggcgtggcggaggtcggcgcgcac
cagatcttcgtgcgggccgactcgcgccgcatgccgatggacatctacctctcgaagcgc
acctggcccgacatcaggaacggcgagaaggtcgtggtccgcatcgtcgattggcagccc
gggagcaagagccccgaaggcgagctggtcgaacggctgggcatggccggaaacaacgac
acggagatgcacgccatcctcgcggaatacgaactgccctaccgcttcgaaacggaggtc
gaagaggccgccgaagccatcgacgcccgggtgacgggcaaggagatcgccgaacggcgc
gacttccggcaggtcgtgaccttcacggtggacccggccgacgccaaggacttcgacgac
gcgctgtcggtgcgtaaaatcaaggacggcgtgtgggagatcggcgtgcacatcgccgac
gtgacccactacgtgcggccccattcggtgatcgacgacgaagccgtggaacgcggcacg
tcggtctatctggtggaccgcaccgtgccgatgctccccgagcggctctcgaacgaactc
tgctcgctgcgcccccacgagacgagcctctgcttctcggcggtcttcaccctcaacgag
aatctcgaaatcctcgaagagtggttcggccgcacggtcatccactccgaccgccgcttc
acctacgccgaggcgcaggagatcatcgagacgggccgcggggactatgccgaagaggtg
ctgaccctcaaccggctggcgcaagcgctgcgggcagagcggttcaagaacggcgccatc
tcgttcgaccgcgaggaggtgaaattcaagctcgacgagaacggcaagcccctgggcgtc
tatttcaaggagcagaaggagtcgaaccagatgatcgaggaattcatgctgctggccaac
cgccgcgtggcggagttctgcggcaagcgccggaccgaaagcggccgcacgacggcgcgc
acgatggtctaccgcgtgcacgactccccgagcgaggagaagctcgaccgcttccgccag
ttcatcctccgcttcgggcacatcttcaaggccacgaagggccgcgccgtggccaaggag
atgaacaagctcttcaagcagatcaagggcaccaccgaggagaacgccgtctcgacgatg
gccgtgcgctcgatggccaaagcctactacacgaccgacaacatcggccactacggactg
gccttcccctactacacgcacttcacctcgcccatccgccgctaccccgacatgatggtc
caccgcctgctggcccgctacctcgcgggcggcaagtcggccgacaagaccgagctggag
gagctctgcgcacgcgcctcggagcgcgaggtggtggccgccgaggccgaacgcgcctcg
atcaagtacaagatggtcgaattcatgaaggagcacatcggcgaggagttcgaagggcac
atctcggggctcacggaatggggcgtctacgtggagctggacgaaacccacatcgagggc
atgtcgttcctgcgggacatcgagggcgacttcttccagttcgacgagcagctctacgag
atcatcggccgctcgacgggcattcgcctgacgctgggcagccccgtgcgcatccgcgtg
aagcgcgccgacctgcaaaagcgccagctcgacttcgaagtgctgctgcccgatgccgca
acgcgccgcgccgccgcagcgtccgaaggccgcggcaaaggccccaaggtccgcacgtca
tcgcgccgcaaaggcaaatag
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