Actinocatenispora sera: Asera_32160
Help
Entry
Asera_32160 CDS
T07446
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aser
Actinocatenispora sera
Pathway
aser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asera_32160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aser03019
]
Asera_32160
03009 Ribosome biogenesis [BR:
aser03009
]
Asera_32160
Enzymes [BR:
aser01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Asera_32160
Messenger RNA biogenesis [BR:
aser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Asera_32160
Ribosome biogenesis [BR:
aser03009
]
Prokaryotic type
rRNA processing factors
Asera_32160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
BCJ29108
UniProt:
A0A810L4Q8
LinkDB
All DBs
Position
3343395..3346298
Genome browser
AA seq
967 aa
AA seq
DB search
MLDNEPTGSTDAVQDAASDADRPTADSPAAPAASRTRRRATRSAGPPKPLEPATTGAAAT
EPPAHADPGIPSRGTDTAAGPAEAAPATKPRGRRATRPAAAPATSATDEAVAISASARGS
GPDDAGRGDDAGEPAPRRTRTRKKAAAPAAEPAPAEPAPAEAAAGAEEAPAPRKRASRRR
ATAASEADTSAGPAATEKPAEPAGDSTAEPAAEQPAEPERPTTRRRRRVAAPVLFVAPDA
AVPATTPTNAPEDQAEPAAETAEPAPERSRGRRKQQAEPAEQAEPEQAEPAAEADEDGLD
DGDGKHRRRRGRRGRGRGKGAAEEAEAAETESGAADEAGESAEADAGEESAEGGRRRRRR
RRRGAAGDTEPSPDDPPNTVVKVREPRRAVDEVQGVSGSTRLEAKRQRRRDGREQRRTRP
PILSESEFLARREAVDRSMVVRQLGDRTQIAVLEDGVLVEHYVSQSTSNTMIGNVYLGKV
QNVLPSMEAAFIDIGRGRNAVLYAGEVNWDSAGLEGRTRAIERALKPGDSVLVQVTKDPI
GHKGARLTSHVTLSGRHLVYVPGGHASGISRKLPDTERKRLRDALKRLVPEHAGVIVRTA
AEGASEDELSRDVTRLQALWETIEKKSTSASAPSLLYEEPDLVIRVVRDLFNEDFKELVV
AGSDAWEMVHEYVEHVSPDLVERLSQHTGSKDVFTELRIDEQLLKALDRKVYLPSGGSLV
IDRTEAMTVIDVNTGKFIGSGGNLEETVTRNNLEAAEEIVRQLRLRDVGGIIVIDFIDMV
LESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRVGQPLIDAFSETCEHCKGRG
VIIHLEPAKHAGKGGGSDSAKQQPADEGKRTGEGKRRRKDKSDKDKLESADKNKSDTVAE
ESVDQQAGADATAEQPVAADSGSGSAAVEAADGPAPDAGPAETPNRRKRAGTRRRKVAEA
EPVTADS
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagccgacaggcagcacggacgcagtgcaggacgccgcgtccgacgcc
gaccggcccaccgcagacagccccgccgcgccggccgcgagccggacccgccggcgggcc
acccgatccgcggggccacccaagccgctggaaccggcgacgaccggcgcggcggccacc
gaaccgcccgcccacgccgaccccggcatcccgtcccgcggcaccgacaccgccgccggg
cccgccgaggcggcgccggcgacgaagccgcgcggtcgccgcgccacccggccggcggcc
gcccccgcgaccagcgcgaccgacgaggccgtcgcgatcagcgcgagcgcccgcggcagc
ggtccggacgacgcgggacgcggcgacgacgccggcgagccggcgccgcgccggacccgt
acccggaagaaggcggcggcaccggctgccgagcccgcaccggcagagcccgcaccggcc
gaggccgcagccggcgccgaggaggcgccggcgccgcgcaagcgggccagccgccgccgg
gcgaccgcagccagcgaggccgacacgtcggccgggcccgcggcgaccgaaaagccggcc
gagccggccggggactcgacggccgaaccggccgcggagcagccggccgaaccggagcga
cccaccacccgccggcgccggcgggtcgcggcgccggtgctgttcgtggcgcccgacgcg
gcggtcccggcgaccacgccgacgaacgcgccggaggaccaggcggagccggcggccgag
accgccgaaccggcgccggagcggtcccgcgggcgccggaagcagcaggccgagccggcc
gagcaggccgagccggagcaggccgaaccggccgccgaggcggacgaggacggcctggac
gacggcgacgggaagcaccgtcggcgtcgcggccggcgcggtcgcggtcgcggcaagggc
gcggcggaggaggccgaggccgccgagaccgagtccggcgcggccgacgaagccggcgag
tccgccgaggccgatgccggtgaggagtcggccgagggtggccgccgccggcgtcgccgg
cgtcgccggggcgccgcgggtgacaccgagccgtccccggacgacccgccgaacaccgtg
gtcaaggtccgcgagccgcgcagggcggtggacgaggtacagggcgtgtcgggctcgacc
cggctggaggccaagcggcagcgccggcgcgacggccgcgagcagcgccgtacccggccg
ccgatcctgtccgagtcggagttcctggcccggcgcgaggcggtcgaccgcagcatggtg
gtgcgccagctcggcgaccgcacccagatcgccgtgctggaagacggcgtgctggtcgag
cactacgtgtcccagtcgaccagcaacaccatgatcggcaacgtctacctcggcaaggtg
cagaacgtcctgcccagcatggaggcggcgttcatcgacatcggccggggccgcaacgcg
gtgctctacgccggcgaggtcaactgggactccgccggcctggagggccgcacccgcgcg
atcgagcgggcgctgaagcccggcgacagcgtgctggtgcaggtcaccaaggatccgatc
gggcacaagggtgcccggctgaccagccacgtcaccctgtccggccgccacctggtgtac
gtgccgggcgggcacgcgtccgggatcagccgcaagctgccggacaccgagcgcaagcgg
ctgcgggacgcgctgaagcggctggtgcccgagcacgccggcgtgatcgtccgcaccgcc
gcggagggcgccagcgaggacgagctgtcccgcgacgtgacgcggctgcaggcgctgtgg
gagacgatcgagaagaagtcgacgtccgcctccgcaccgtccctgctgtacgaggagccg
gacctggtgatccgggtcgtccgcgacctgttcaacgaggacttcaaggagctggtggtc
gccggctcggacgcctgggagatggtgcacgagtacgtcgagcacgtctcgccggacctg
gtcgagcggctgagccagcacaccggcagcaaggacgtgttcaccgagctgcgcatcgac
gagcagctgttgaaggcgctcgaccgcaaggtgtacctgcccagcggcggatcgctggtc
atcgaccgcaccgaggcgatgaccgtgatcgatgtcaacaccggcaagttcatcggctcc
ggcggcaacctggaagagacggtcacccgcaacaacctggaggcggccgaggagatcgtt
cgccagctgcggctgcgggacgtcggcggcatcatcgtcatcgacttcatcgacatggtg
ctggagagcaaccgggagctggtgttgcgccggttgaccgagtgcctcggccgggaccgg
accaagcaccaggtcaccgagatcacctcgctggggctggtgcagatgacccgcaagcgg
gtcggccagccgctgatcgacgcgttcagcgagacctgcgagcactgcaagggccgcggc
gtgatcatccacctggagccggccaagcacgccggcaagggtggcgggtcggactcggcg
aagcagcagcccgccgacgagggcaagcggaccggtgagggcaagcgccgccgcaaggac
aagtccgacaaggacaagcttgagagcgccgacaagaacaagtcggacacggtggccgag
gagtccgtcgaccagcaggccggcgcggacgcgacggcggagcagccggtcgcagccgac
agcggcagcgggtcggccgcggtcgaggcggcggacgggccagccccggacgccgggccg
gccgagaccccgaaccggcgcaagcgggcaggtacccggcggcgcaaggtggccgaggcc
gaaccggtcaccgcggacagctga
DBGET
integrated database retrieval system
