Actinocatenispora sera: Asera_40620
Help
Entry
Asera_40620 CDS
T07446
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aser
Actinocatenispora sera
Brite
KEGG Orthology (KO) [BR:
aser00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aser03019
]
Asera_40620 (hrpB)
Enzymes [BR:
aser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Asera_40620 (hrpB)
Messenger RNA biogenesis [BR:
aser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Asera_40620 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_25
AAA_19
AAA_22
ResIII
AAA_30
nSTAND3
ParA
AAA_28
AAA
Motif
Other DBs
NCBI-ProteinID:
BCJ29954
UniProt:
A0A810L3C3
LinkDB
All DBs
Position
complement(4249206..4251677)
Genome browser
AA seq
823 aa
AA seq
DB search
MLPAEPDLPIRSVLRELTDTLRAAGSAVLVAPPGTGKTTLAPLALADALEGRVVVAEPRR
VATRAAARRMADLLGEPVGDRIGYAVRGERRVSARTRVEVVTTGLLVRRLLRDEELPGVA
AVILDECHERAVDSDLALAFTTDVRAVLREDLWLLATSATADVPALRSALSAPVVTASAA
LHPVTPVWCPPPAPVRPPLGLRVDPALLSHVAATVRRALAETTGDVLVFLPGTGEIRTVH
SALSTVDAEVAELHGRLPAAAQDAVLRGGSGHRRVVLTTSVAESSLTVPGVRVVVDAGLA
RVPRVDLARGLGSLATVPVSRAAAEQRAGRAGRQGPGTVYRCWSAAQHERLPARPEPEIA
VADLTSFALDLACWGRPDGTGLALPEPPPAGAMAVATETLLALGAVDPQGRVTDRGRALA
AAGTHPRLARALLDGAPRLGSRRTAELVALLAEPDSAGGDDLAAARRAVERDRRASGWRA
EAHRLQRAAPRHPDTGVSAEAAAGVVAALAFPERIARRRDGETGSYLMAGGTEAQLSPGS
GLHGAEWLAIAVADRPVGRAAARIRLAAAIDADTAAEIGAALRHTEQRIGWYDGDVRAER
TERLGAIPLSVRPIRHPDPTAVHDALLAGLRAEGPQLLRFGPGGTALRDRIAFCRTVFGA
PWPDVSDAGLVADPDRWLGPELARARRRADLARVDAGAALRRLLDWRQTAELDRLAPERV
AVPSGSAIRVDYTDPAAPVLAVKVQEMFGAAETPRIAAGRVPLTLHLLSPAGRPTAVTSD
LASFWRTGYPAVRAELRGRYPRHPWPADPTTAPATRRTNPRRR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccgccgagcccgacctgccgatccggtcggtgcttcgcgagctgaccgacacg
ctgcgagcggccgggagcgcggtgctggtggcgccgcccggcaccggcaagaccacgctg
gcgccgctggcgctggcggacgctctcgagggtcgggtcgtggtggccgaaccgcgccgg
gtggcgacccgggccgcggcccggcggatggccgacctgctgggcgagccggtcggcgat
cggatcgggtacgcggtgcgcggcgagcgccgggtctcggctcggacccgggtcgaggtg
gtcaccaccggcctgctggtacgccggctgctgcgcgacgaggagctgcccggcgtcgcc
gcggtgatcctggacgagtgccacgaacgggccgtcgattcggacctggcgctggcgttc
accaccgacgtgcgggccgtgctgcgcgaggatctgtggctgctcgccacctcggccacc
gcggacgtaccggcgctgcgctcggcgctgtccgcaccggtggtgaccgcgtcggcggcg
ctgcatccggtgaccccggtatggtgcccgccgccggcaccggtccggccgccgctcggg
ctgcgggtcgatccggccctgctctcgcacgtggcggccacggtgcgccgggcgctggcc
gagaccaccggcgacgtgctggtgttcctgcccggtaccggtgagatccgcaccgtccac
tccgcactgtccactgtggatgccgaggtggcggagctgcacgggcggctcccggcggcg
gcccaggatgcggtgctgcggggtggttccggccaccgtcgcgtggtgctcaccacctcg
gtcgccgagagcagcctgaccgtcccgggggtacgggtcgtcgtcgacgccggcctggcc
cgggtgccccgggtggacctggcccgcggcctcggctcgctcgcgaccgtaccggtgtct
cgcgccgccgccgagcagcgggcgggccgggccgggcgccagggcccgggtaccgtctac
cggtgctggtcggcggcgcagcacgagcggctgccggcccggccggagccggagatcgcg
gtcgccgatctcacctcgttcgcgctggacctggcctgctgggggcggccggacgggacc
ggcctggcgctgcccgagccgccaccggccggtgcgatggcggtggccaccgagacgctc
ctcgcgctcggcgccgtcgacccgcagggccgggtgaccgaccggggccgtgcgctcgcc
gccgccggtacccacccgcggctggcccgggcgctgctcgacggcgcgccgcgactgggc
agccggcgtaccgcggagctggtggcgctgctggccgagccggacagcgccggaggcgac
gacctggccgccgcccgccgagcggtcgagcgggaccggcgcgcgtccggctggcgggcc
gaggcgcaccggttgcagcgggccgcgccgcgccacccggacaccggcgtcagcgccgag
gccgcggccggagtcgttgcggcactggcgttcccggaacggatcgcccggcgacgagac
ggcgagacgggcagctacctgatggccggcggtaccgaggcgcagctgtcgccgggctcg
ggactgcacggcgccgagtggctggcgatcgccgtcgcggaccgcccggtcggccgggcc
gccgcccggatccgcctcgccgcggcgatcgacgcggacaccgccgccgagatcggcgcc
gcgctgcgacacaccgaacagcggatcggctggtacgacggcgatgtgcgcgccgaacgg
accgagcggctcggcgccatcccgctgtcggtccggccgatccggcacccggaccccacc
gccgtgcacgacgcgctgctcgccggcctgcgcgcagagggaccgcaactgctccggttc
ggcccgggaggcaccgcgctgcgggaccggatcgccttctgccgcaccgtgttcggcgcg
ccgtggccggacgtctcggacgccgggctggtcgccgacccggaccggtggctgggtccc
gaactggctcgggcccgccgccgggccgacctggcccgcgtcgacgccggtgccgcgctg
cgccggctgctcgactggcgccagaccgccgagctggaccggctcgcgccggagcgggtc
gcggtgcccagcggctcggcgatccgggtcgactacaccgatccggccgcgccggtactc
gcggtgaaggtacaggagatgttcggcgcggcggagaccccgcgcatcgctgccgggcgg
gtaccgctgacgctgcacctgctgtcccccgccggccgcccgaccgcggtgacgagcgac
ctggcgtccttctggcgaaccggctatccggcggtacgggccgagctacgcggacgctac
ccgcggcacccgtggccggcggacccgaccaccgcaccggcgactcgccgtaccaacccg
cgccggaggtga
DBGET
integrated database retrieval system
