Actinotignum schaalii: FB03_03980
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Entry
FB03_03980 CDS
T03214
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asg
Actinotignum schaalii
Pathway
asg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FB03_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asg03021
]
FB03_03980
03400 DNA repair and recombination proteins [BR:
asg03400
]
FB03_03980
Enzymes [BR:
asg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FB03_03980
Transcription machinery [BR:
asg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FB03_03980
DNA repair and recombination proteins [BR:
asg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FB03_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIE82569
LinkDB
All DBs
Position
complement(904966..908853)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNRFDQLHIGLATSDDIRAWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRPRFKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDV
APKDLEKVIYFAAYMVTEVDEEARRADMPTLQSEYELERRALEKNRDVALESRQQELEKE
LAQAEEDGATDSQKQKIKRAADNDLAKIRKNTDRELERLETMWDRFTKLKVGDLEGDEDL
YREMDAHYGDYFKAARGAEAIQARLRSFDLQAEHDRLVEVIESGTAQRKARALKRIKVVN
AFLHSDTKPESMVLDALPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL
GAPEIMVNNEKRMLQESVDALFDNGRRGRPVQGAGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTMKLHQCGLPRVMALELFKPFVQKRLVDLEIAKNIKASKRFIDRQR
PEVWDVLEEVMREHPVLLNRAPTLHRLGIQAFEPLMIEGKAIRLHPLVCSAFNADFDGDQ
MAVHLPLSVEAQAEARILMLSSNNILKPSDGRPVTMPSQDMVIGLFYLTSQVDGATGEGR
YFTSIDEAQMAYDMGSLDLNAKVKIRFEADVVPPRGWKAPENFEEGDRLLLETTLGRAIF
NDSLPVDFPYVNETVDKKVLGGIVNRLAERYEKVYVAASLDALKSAGFYWAGRSGATIAV
SDVVVPESKPEILAEAEKKAAVIENQFLTGRIEDEDRRRDLVDLWSEVTDAIAVEMRENF
TADNTVNRMVSSGARGNWEQVRQIAGMRGLVADPKGAIIPRPITSNYREGLSVLEYFVAT
HGARKGLADTALRTADSGYLTRRLVDVAQDVIVRESDCGTSRGLTKTIAEKGADGTLIPD
PQLDTSVYARTLAKDVVSEDGDVLAAAGTDLGDAIIEHLIENGVTQVSVRSVLTCQSRTG
TCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRV
QELFEARTPKGEAPIAEAAGILQIEDGERVRRLIIQRDDAEEDLVYQVSKRAKLFVPEGG
HVNVGQQLVEGSVDPKKVLRISGRRVAQEHIVSEVQAVYRSQGVEIHDKHIEVIVRQMLR
RITVLEAGTTKLLPGELVDVARFEDENRAAMAEGGKPASGRPELMGITKASLATDSWLSA
ASFQETTRVLTEAALNSKSDPLEGLKENVILGKLIPAGTGLETMRSAKIEPTAEARVEFE
KNNGFAATDFDMFDDTFPYTDFQEFDLGAGYGMFS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgttaatcgttttgaccagctccacattggtctggcaacctcggatgatatc
cgtgcctggtcgcacggtgaggtgaagaagccggaaactatcaactaccgcaccctcaag
ccggaaaaggacggcctgttcggcgaacagatcttcgggcccacccgcgattgggaatgt
gcctgcggtaagtacaagcggccgcggttcaagggcatcgtctgcgaacgctgcggcgtg
gaagtcacccgctcgaaggtgcggcgcgaacggatgggccatattgagctcgccgctccc
gtcacccatatttggtacttcaagggcgtgccctcgcgcctgggctacctcctggacgtg
gcccccaaggacctcgaaaaggtcatctacttcgccgcctatatggtgaccgaagttgat
gaagaggcccgccgcgcggatatgcccaccctccagtccgaatacgaactggagcgccgc
gccctggaaaagaaccgggatgttgccctcgaaagccgccagcaggagctcgaaaaggag
ctcgcgcaggccgaagaagatggcgctaccgattcccagaagcagaagatcaagcgcgcg
gccgataacgacctcgccaagatccgcaagaatacagatcgcgaactcgagcgcctggaa
accatgtgggatcgcttcaccaagctcaaggtgggggatctggaaggcgatgaagacctc
taccgcgaaatggacgcgcactacggcgactacttcaaggccgcccgcggtgcggaagcg
attcaggcccggctgcgttccttcgacctccaggccgaacatgaccgcctcgtggaggtc
atcgaatcgggtaccgcccagcgcaaggcccgcgctctcaagcgcatcaaggtggttaac
gccttcctgcactcggataccaagcccgaatcgatggtgctcgatgccctcccggtgatc
ccgccggacctgcgccccatggttcagctggacggtggccgcttcgcgacctccgatctc
aacgacctctaccgccgcgtgatcaaccggaataaccgcctcaagcgcatgctggacctg
ggtgccccggagatcatggtcaataacgaaaagcgcatgctccaggaatccgtggacgcg
ctcttcgataacggccggcgcgggcgcccggtgcagggcgcgggtaaccgccccctcaag
tcgctctccgatatgctcaagggcaagcagggccgcttccgccagaacctgctgggtaag
cgcgtggactactcgggccgctccgtgatcgtggtgggcccgaccatgaagctgcaccag
tgcgggctgccgcgtgtgatggccctcgaactgttcaagcccttcgtgcaaaagcggctg
gtggacctggaaatcgccaagaatatcaaggcgtccaagcgtttcatcgaccgccagcgc
cccgaagtgtgggacgttctcgaagaggttatgcgcgagcacccggtgctcctcaaccgc
gcacctaccctgcaccgcctgggcattcaggccttcgagccgctcatgattgaaggcaag
gcgatccgcctgcacccgctggtgtgctccgccttcaacgcggacttcgacggcgaccag
atggccgtgcacctcccgctttccgtggaagcccaggccgaggcgcgcatccttatgctc
tcctcgaataacatcctcaagccctccgacgggcgccccgtgaccatgccttcgcaggac
atggtgatcgggctgttctacctgacatctcaggtcgacggcgccaccggggaaggccgc
tacttcacctccattgatgaagcgcagatggcctatgacatgggcagtcttgacctcaat
gcgaaggtgaagattcgtttcgaagcggacgttgttcccccgcgcggctggaaggccccg
gagaacttcgaagagggtgaccggctgctgctggaaaccaccctgggccgcgcgattttt
aatgattcgctcccggtggacttcccctacgtcaatgagaccgtcgataagaaggtgctt
ggcgggatcgtcaatcgcctggccgaacgctacgagaaggtctacgtggccgcctcgctg
gatgccctgaaatcggctggtttctactgggccgggcgcagcggtgccaccattgcggta
tcggacgtcgtcgtaccagaatcgaagccggaaattttggcggaagccgaaaagaaggcc
gcggttatcgaaaaccagttcctcaccggccgtatcgaggacgaggatcgccgccgcgac
ctcgtggacctctggtcggaagtgacggacgcgatcgccgtggagatgcgcgaaaacttc
accgcggacaataccgtgaaccgcatggtgtcctccggggcgcgcggtaactgggaacag
gtccgccagatcgcgggtatgcgcggcctggtggccgacccgaagggtgcgattattccc
cgcccgattacctcgaattaccgcgagggcctctcggttctggaatacttcgtggcgacc
cacggtgcccgcaagggcctggcggataccgcgctccgtaccgccgattccgggtacctc
acccgccgtctcgtggacgtggcgcaggatgtcatcgtgcgcgaatccgattgcgggacc
agccgcgggctgaccaagaccatcgcggagaagggcgccgacggtaccctcattcccgat
ccgcagctggatacctccgtgtacgctcgcaccctcgcgaaggacgtcgtgtctgaggat
ggcgacgtgctggcggctgccggaaccgatctgggcgatgcgattatcgagcatctcatc
gagaacggcgtgacccaggtttcggtacgttccgtgctgacctgccagtcgcgcaccggt
acctgcgccaagtgctacggccgctccatggccaccggcaagctcgtggatatcggcgaa
gcggtgggtatcgtggccgcccagtccattggtgaaccgggtacccagctgacgatgcgt
accttccacaccggtggttcggcctccgcggacgacatcacccagggtcttccccgtgtg
caggaactcttcgaagcccgtaccccgaagggcgaggccccgatcgcggaagcggccggc
atcctccagatcgaggacggggagcgcgtacgtcgcctcattattcagcgcgacgacgcc
gaagaggaccttgtctaccaggtctccaagcgagccaagctcttcgttcccgaaggtggc
cacgtcaatgttggtcagcagctcgtggaaggtagcgtggaccccaagaaggtgctgcgt
atttccgggcgccgggtggctcaggaacatatcgtttccgaagtgcaggcggtgtaccgc
tcccagggcgtggaaatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcgc
cgtattaccgtgctggaagccggaaccacgaagctgctcccgggcgagctcgtggacgtg
gcgcgcttcgaagatgagaaccgcgcggcgatggccgaaggtggcaagcctgcctccggg
cgccccgagctcatgggtattaccaaggcctccctggccacggattcctggctctcggcg
gcctccttccaggagaccacccgcgtcctcaccgaggctgcgctcaattccaagtccgat
ccgctcgagggcctcaaggaaaacgttatcctcggtaagctcatcccggccggtaccggc
ctggagacgatgcgctcggccaagatcgaaccgactgccgaagctcgggtggagttcgaa
aagaacaacggctttgccgccaccgatttcgacatgttcgatgacaccttcccgtatacc
gacttccaagagttcgatctcggagccggctacggaatgttctcctaa
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integrated database retrieval system
