Actinotignum schaalii: FB03_06030
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Entry
FB03_06030 CDS
T03214
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
asg
Actinotignum schaalii
Brite
KEGG Orthology (KO) [BR:
asg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asg03019
]
FB03_06030
Enzymes [BR:
asg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FB03_06030
Messenger RNA biogenesis [BR:
asg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FB03_06030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
AAA_19
DEAD
AAA_22
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
ABC_tran
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AIE82880
LinkDB
All DBs
Position
1394701..1399368
Genome browser
AA seq
1555 aa
AA seq
DB search
MDKSQEPAAPSGKGEANHHARTDQRNGDGSTSRQGDGASRRRRSNRTGTQGNRGRNNNQS
KRRSNRANRTNPRGPRPFTPAQLEARRAAVPRISYPETLPVSARRAEIREAIAANQVVII
AGETGSGKTTQLPKICLELGRGITGLIGHTQPRRIAARSVAERIAAELGQKVGGAVGYQV
RFTEEVGPTTLVKLMTDGILLAEIQSDPQLLRYDTLIIDEAHERSLNIDFILGYLARLLP
ARPDLKVIITSATIDTERFAAHFGEHRAGGRPGDTAPIIEVSGRTYPVEIRYRPLDEEQD
TDQGEQYDDAGAQRVTAPRTPGRAAALDQVSGIVAAAEELMAEGEGDILVFLSGEGEIRD
TAKALDDELGARYVAPGGSSSAPGAVEVLPLFSRLSAAEQHRIFQPGPYRRIILATNIAE
TSLTVPGIKYVIDPGTARISRYSNKTKVQRLPIEPISQASANQRSGRCGRVMDGIAIRLY
SEDDFLARPEFTQPEIQRTSLAAVILQMLALGLGAVDDFPFIDPPEARAVRAGTQLLEEI
GAITYGAAGAFGAAGAAGTEHGATESDPAQSDHPESRWTESSRAAHRHAPRLTAIGRQLA
RLPIDPRLGRMLIEAQRNGCASEVLVLVAALSVQDVRERPTEKRAQADQFHARFTAGSSD
FLAYLTLWRYLRTQARELSGSAFRRMCRAEFLNYLRYREWADVVAQLEQMARPLELTIRR
LALPSPKQIRAAADAGAAQLGGAPNSGAVAHACRELGRGSDTPESGAIHRSLLVGLLSNI
GNYSPRSRDYLGARGTHFVIWPGSGLHRRTPEWVMAAELVETSRLFARTVAAIQPEWIEP
LAKKLVRRSYSEPYWSAKNGAAMVHEKVTLYGVTLVADRPVLLATSGSDAARELAREMFI
RHGLVEGEWRTHHEFLARNRAALEEAGRTEDKLRRHGLVADNDALAAFYEERIPESVVSG
RHFDSWWKKERHARPELLDFTQDFLLGGAGGSAAEEDFPTEWRQGDITLPITYTFAPGSF
NDGITVDVPIALLPRLRPDGFDWLVPGMLDELVVATIRALPKRVRRNLVPAPDVARDIRA
VLPSWEEAVHGGAGARGGDADGNASGGDVRGGGPISFEEAFRAATARVRGIEIDDAAWQE
VNLPAHLTVNFRVRSERGAVLEESTSLEYLQRSLAPQTKAAVEDVVAGAVAQALDEARAR
LRKSSAAKQGTKHSASAQSADTPSAGTPAASAPSAGVPTTSSASTTGSAGAAATELASGD
ALTGWPEVEQGIIPAVIETEGPAGTVRAYPALADRAGKVVLDVVAEPGEQVRVHRGGVIR
LLADALALPEGRITSRWDGELALQLAGSPAPSTAALVADLQWAAARNLADRWGAANDASP
EELRSGREFEELQAWARDEFEDEVFLIAQGAGKAAAAWAEVEQLVRDNRSVALLATMSDE
RAHLDALMPADFVRATPAARFWDLPRYLQAAKLRIEKAAVNPAADDSLAWQVQTAADAVE
NAREEASYAAFDPGRARVLDHARWLLEELRVSLFAQQLGTKEKVSVKRIQKLLAS
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atggataagtctcaggaacccgcagcgccctccggcaagggcgaggccaaccaccacgcc
cgcaccgaccagcgcaacggtgatggctcgaccagccggcagggagatggcgcttcgcgc
cgtcgtcgttccaaccgcaccggcacgcaaggcaaccgcggccgcaacaataaccaaagc
aaacgccgcagcaaccgcgccaaccgcaccaacccacgcgggccgcggcccttcaccccc
gcgcaactcgaagcgcgccgggccgccgtcccgcgcattagctacccggaaaccctaccc
gtttccgctcggcgcgcggagatccgcgaggccatcgccgcgaaccaggtggttattatc
gccggggaaaccggctccgggaaaaccacgcagctgccgaaaatctgcctggagctgggc
cgcggcatcaccgggctcatcgggcacacccagccgcggcgcatcgccgcccgctcggtt
gccgaacgcatcgcggccgaactggggcagaaagtcggcggcgccgtcggctatcaggtg
cgtttcaccgaagaagtgggccccaccacgctcgtcaaactcatgacggacggcatcctg
ctcgcggaaatccaatctgatccgcaactactgcgctacgacaccctcatcatcgacgaa
gcgcacgaacgctccctcaatatcgacttcatcctcggctacctcgcgcgcctgctgccc
gcgcgccccgacctcaaagtcatcatcacctccgcgaccatcgacaccgagcgcttcgcc
gcgcatttcggcgagcaccgcgcgggcggccgccccggcgacaccgcgcccatcatcgaa
gtgtccgggcgcacgtatccggtggaaatccggtaccggcccctcgatgaggaacaggat
acggaccagggcgaacagtacgacgacgccggtgcgcagcgcgtaaccgcgccgcgcacc
ccgggccgggccgcggcacttgatcaggtgagtggaatcgtggcggctgccgaggagctc
atggcggaaggcgagggcgatattctggtcttcctctccggggaaggcgagattcgcgat
accgcgaaggcgctcgatgacgagctcggggcgcgatatgtggcgcccggggggagctcc
agcgcgccgggcgccgtggaggtgctgccgctgttttcgcggctttccgcggccgaacag
caccggattttccagcccggtccctaccggcgcattatcctggccacgaatattgcggag
acgtcgctgacggtccccggaatcaagtacgtgattgacccgggcaccgcgcgcatttcg
cgctactcgaataagacgaaggtgcagcgcctgcccatcgagccgatttcgcaggccagc
gccaatcagcggtcggggcggtgcgggcgcgttatggacgggatcgcgatccggctctat
tccgaggatgatttcctggctcggcccgaattcacccagccggagattcagcgcacgtcg
ctggccgcggtgattttgcagatgctcgcgctcgggctgggcgccgtcgacgattttcct
tttattgacccgcccgaagcgcgggcggtgcgggccggaacccagctcctcgaagaaatc
ggggcgattacttatggagcggcgggtgcctttggggcggcgggcgcggctgggaccgag
cacggcgccacggaaagcgaccccgcacagagcgaccacccggaaagccgctggacagaa
agcagccgcgccgcgcaccgccacgccccgcgcctgaccgccatcgggcggcagctcgcg
cgcctgcctattgacccgcgcctgggccgcatgcttatcgaggcgcagcgcaacgggtgc
gcttccgaagtattggtgctggtggcggcgctgtcggtgcaggatgtgcgcgagcggccc
accgagaaacgcgcccaggccgatcagttccacgcgcggttcacggccggctcatcggat
ttcctcgcgtatctgacgctgtggcgctatctgcgcacccaggcgcgcgagctgtccggt
tcggcgttccggcgcatgtgccgcgcggaattcctcaactacctgcgctatcgcgagtgg
gcggatgtggtggcgcagctggagcagatggcgcggccgctggagctgacgatccgccgc
ctggcgctgcccagcccgaagcagattcgcgccgcggccgatgcgggggcggctcagctg
ggcggggccccgaattccggtgcggtggcccacgcctgccgcgagctcgggcgcggttcg
gataccccggaatcgggggcgattcaccggtcgctgctggtggggctgctgtccaatatc
ggcaattattccccgcgcagccgcgattacctgggcgcgcgcggcacccatttcgtgatc
tggcccggctcgggcctgcaccggcgcaccccggagtgggtgatggccgccgagctggtg
gaaacgtcccggctgttcgcccgcaccgtggccgcgatccagccggagtggatcgagccg
ctggcgaagaagctggtacggcgttcctattcggagccgtattggtcggcgaagaacggc
gcggcgatggttcacgaaaaggtgacgctttacggggtgaccctggtggcggaccgcccc
gtgctgctggcaacctccggttcggatgcggcgcgcgagctggcccgcgagatgttcatc
cgccacgggctggtggagggtgagtggcgcactcaccacgagttcctggcccgcaaccgc
gcggccctcgaggaggccggccgcaccgaagataagctgcgccgccacgggctggtggct
gataatgacgcgctggccgcgttttacgaggagcgcatcccggagagcgtggtttccggg
cggcatttcgattcctggtggaagaaagaacgccacgcgcgccccgaactgctcgatttc
acgcaggatttcctgctgggcggcgccggcggaagcgccgcggaagaggacttccccacc
gaatggcgccagggcgatatcacgctgcccatcacctacaccttcgcgccgggctcgttc
aacgacggcatcaccgtggacgtgcccatcgcgctgctcccccgcctacgcccggacggt
ttcgactggctggtgcccgggatgctggacgaactcgtggtcgccaccatccgcgcgcta
cctaaacgcgtgcgccgcaacctggtgcctgccccggacgttgcgcgcgatatccgcgcg
gtgctgcccagctgggaggaagcggtgcacgggggcgccggtgcgcgtgggggcgacgcg
gacggtaacgcgagcggcggtgacgtgcgcggtggcggaccgatttctttcgaggaggct
tttcgcgcagctacggcccgcgtgcgcggtattgagatcgacgacgccgcatggcaggag
gttaatcttcccgcgcatctgactgtgaatttccgggtgcgttcggagcggggtgcggtg
cttgaagaatctacgtcgctcgaatatttgcagcgcagtcttgccccgcaaacgaaggcg
gcggtggaagatgtggtggccggggcggtggcccaggcccttgatgaagcacgagcgcgg
ttgcgcaagtcgagcgcggcgaaacagggcacgaagcactccgcgagtgcacagtctgcg
gacaccccatccgccggcacgccagccgcgagcgcgccgtcagcgggtgtgccaaccaca
agttcggccagcaccaccggttcggccggtgcggccgccaccgaactcgcatccggggac
gctttgaccggctggcccgaggtggagcaggggattatcccggcggttatcgaaactgag
ggaccggccgggacggttcgtgcctacccggcgctcgctgaccgcgccggaaaggttgtg
ctggatgtggtggcggagccgggtgagcaggtgcgggtgcatcgcggcggagtgattcgt
ttgctcgcggatgcgctggcgctgcccgagggccggatcacctcgcgctgggatggcgag
ctggctttgcagctggcgggtagcccggcgccttctacggcggcgctggtggccgatctg
cagtgggcggcggcgcggaatctcgccgaccgctggggtgcggccaatgatgccagcccg
gaggagctgcgttccgggcgtgaattcgaggaattgcaggcttgggctcgtgacgagttc
gaggacgaggtgttcttgatcgcgcagggtgcgggcaaggccgcggccgcctgggcagag
gtggaacagctggtgcgggacaaccgctcagtggcgctgcttgccacaatgagcgacgag
cgcgcccatttggatgcgctcatgcccgccgattttgtgcgggccacgccggcagcacgc
ttctgggatctgccacgctatctccaggccgcgaaactgcgcatcgagaaggccgcggtg
aatccggcagccgatgattcgctcgcctggcaggtgcaaaccgcggcggatgcggtggag
aacgcccgcgaagaagccagctacgcggctttcgatccgggccgcgcgcgggtgctcgac
catgctcgctggctcctggaagaactgcgcgtctcgcttttcgcccagcagttgggcacc
aaggaaaaggtttccgtcaagcgcatccaaaagttgttggccagctaa
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