Alistipes shahii: AL1_05260
Help
Entry
AL1_05260 CDS
T02578
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ash
Alistipes shahii
Pathway
ash03030
DNA replication
ash03430
Mismatch repair
ash03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ash00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL1_05260
03430 Mismatch repair
AL1_05260
03440 Homologous recombination
AL1_05260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ash03032
]
AL1_05260
03400 DNA repair and recombination proteins [BR:
ash03400
]
AL1_05260
Enzymes [BR:
ash01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AL1_05260
DNA replication proteins [BR:
ash03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AL1_05260
DNA repair and recombination proteins [BR:
ash03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AL1_05260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
Motif
Other DBs
NCBI-ProteinID:
CBK63159
UniProt:
D4IJP7
LinkDB
All DBs
Position
complement(599515..603324)
Genome browser
AA seq
1269 aa
AA seq
DB search
MPQFVHLHVHTQYSILDGQASVQRLVDKAMADGQPGIAVTDHGDMFGIKEFYNYVQKVKG
KCKDKAAEAEARIAALRDGTETCADPAAEIAKCERQLEECRRKLAFKPIIGCEVYVARRR
LHDKEGKPDQSGYHLILLAKNLKGYHNLIKIVSKAWTEGFYMRPRTDRTEIEKYHEGLIC
CSACLAGEVPRAITANDLEKAEESIRWHKKVFGDDYYLELQLHKATVERANHEAYPMQLH
VNKHLRELAAKHNVRMVCTNDVHFVDEDNAEAHDRLICLSTGKDLDDPKRMLYSKQEWLK
TTAEMAAIFGQTDPEAMSTTVDICNQIECYSIDHAPIMPNFEIPEEFGTEAEYRARLTEK
DLFDEFTRDENGNVVMSEEEGLKKIQKLGGYDKLYRIKFEADYLAKLTMDGAHRRYGEQL
TEEQEERLKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCLGI
TQIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTQKYGKEKVAHIITYGTM
ATKLAIKDVARVQKLMLSESDRLCKLVPDKIPDKKLNLQNAIDYVPELKAAEQSDNPILR
DTIRYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED
TGLIKMDFLGLKTLSIIKDAVENIRLTKGVKIDIDDFTIINDPATYRLYGEGRTVGTFQF
ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIARKHGRSPIEYDIPVMEKYLK
DTYGITVYQEQVMLLSRLLANFTRGESDTLRKAMGKKLKDKLDHLKPKFIEGGRKNGHDP
KVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVLSRNLTNIEQLT
LYMNECKRMGISVMGPDINESMRTFSSNAAGDVRFGLAAVKGVGAAAVESIIAERKANGP
FKDIYDFVERVNYSLVNRKCLENLAYAGAFDSISDFARCKYFGVDLRDSSGITFIEQLMR
YGQRFQTEQNNAQQSLFGGGEHVDIQRPVLPACADWSQLEKLTKEREMVGLYLSAHPLDD
YKIIIDHMCKTQLSELENLDALKGQEIAVAGMVVGVQNLMTKTGKPWGKFKLEDYNGGHE
FALFGKDYENFRKYLFPDYFLFVRGRVQAKPYNDKELEFKIISMVQLQEMRDTIKEMIVQ
LPIEEVTEAFIHDLTERVRESKGDTLLRLNVYDRGAQVSLRLFSKSHKVSLSQSLVGYLD
DNSIHYSIA
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgccccaattcgtacaccttcacgtacatacgcaatattcgatcctcgacggacaggcc
agcgtccagcggctcgtggacaaggccatggccgacggacagcccggcatcgccgtgacg
gaccacggcgacatgttcggcatcaaggagttctacaactacgtccagaaagtcaagggc
aaatgcaaggacaaggccgccgaggcggaggcccgcatcgccgccctgcgcgacggcacg
gagacctgcgccgaccctgctgccgagatcgccaaatgcgaaagacaactggaggagtgc
cggcgcaaactcgccttcaagcccatcatcggctgcgaggtctacgtggcgcgccgccgg
ctccacgacaaggagggcaagcccgaccagagcggctaccacctgatcctgctggccaag
aacctcaagggataccacaacctcatcaagatcgtctcgaaggcgtggaccgaaggtttc
tacatgcgtccgcgaaccgaccgcacggagatcgagaaataccacgaagggctgatctgc
tgttcggcctgtctggcgggcgaggttccgcgcgccatcacggccaacgacctcgaaaag
gccgaggagtcgatccgatggcacaagaaggtcttcggcgacgactattacctcgaactg
caactccacaaggccaccgtcgagcgggccaaccacgaggcctatcccatgcagctgcac
gtgaacaagcacctgcgcgaactggccgcgaagcacaacgtcagaatggtctgcaccaac
gacgtgcacttcgtggacgaagacaacgccgaggcgcacgaccggctgatctgtctctcg
acgggcaaggacctcgacgaccccaagcgcatgctctactcgaagcaggagtggctcaag
acgacggccgagatggccgcgatcttcggccagaccgaccccgaggcgatgtcgacgacc
gtcgacatctgcaaccagatcgagtgctactcgatcgaccatgcgccgatcatgcctaac
ttcgagatccccgaggagttcggaaccgaggccgaataccgcgcccggctcacggaaaag
gaccttttcgatgaattcacgcgcgacgagaacggcaacgtggtgatgtcggaggaggag
ggactcaagaagattcagaaattaggaggttacgacaaactctaccgcatcaagttcgag
gccgactatctggccaagctgacgatggacggcgcgcacaggcgctacggcgagcagctg
accgaagagcaggaggaacggctgaaattcgagctgcacattatgaagacgatgggtttc
ccgggctacttcctgatcgtgcaggacttcatacgcgccgcgcgcgaggagctggacgtg
tcggtgggtccgggccgcggatcggccgccggatcggccgtggcctactgcctcggcatc
acgcagatcgaccccatcgcctacgacctgctgttcgagcgtttcctgaaccccgaccgt
atttcgctccccgatattgacgtcgacttcgacgacgacggccgcggaagggtcctgaac
tgggtgacgcagaaatacggcaaggagaaggtggcgcacatcatcacctacggcacgatg
gccaccaaactggccatcaaggacgtggcgcgcgtgcagaaactgatgctctcggagtcg
gaccgcctctgcaaactcgtgccggacaagattcccgacaagaagctcaacttgcagaac
gccatcgactacgtccccgaactgaaagccgccgaacagtcggacaacccgattctgcgc
gatacgatccgttacgccaagatgctcgaaggaaatgtccgcaacacgggcgtgcacgcc
tgcggcacgatcatctgccgcgacgacatcacggactgggtccccgtctcgacggccgac
gacaaggagaccggcgagaagatgctcgtcacgcagtacgagggttcggtgatcgaggac
acgggactgatcaagatggacttcctggggctgaagaccctttcgatcatcaaggacgcc
gtggagaacatccgcctgaccaagggcgtgaagatcgacatcgacgacttcacgatcatc
aacgaccccgcgacctaccgcctctacggcgagggccgcaccgtcgggacgttccagttc
gagtccgcgggcatgcagaagtacctgcgcgagctgcaaccctcgaccttcgaggacctg
atcgcgatgaacgccctctaccggcccggcccgatggactacatcccggacttcatcgcc
cgcaagcacggccgcagccccatcgagtacgacatccccgtgatggagaagtacctcaag
gacacctacggcatcacggtctaccaggagcaggtcatgttgctgtcgcgtcttctggcc
aacttcacccgcggcgagtcggacacgctccgcaaggccatgggcaagaaactcaaggac
aagctggaccacctgaaacccaagttcatcgagggcggcaggaagaacggacacgatccg
aaggtgctcgaaaagatctggggcgactgggagaaattcgcctcctacgcgttcaacaag
tcgcacgccacgtgctactcgtgggtggcttaccagacggcctacctcaaggccaactac
ccttcggagtacatggctgccgtgttgagccgaaacctcacgaacatcgagcagctgacg
ctctacatgaacgagtgcaagcgcatgggcatcagcgtcatgggacccgacatcaacgag
tcgatgcggaccttctcgtccaacgccgccggggacgtgcgcttcggcctcgcggcggtg
aagggcgtcggtgcggcggccgtggagagcatcatcgccgaacgcaaggccaacgggcct
ttcaaggacatatacgacttcgtcgagcgcgtgaactactcgctcgtcaaccgcaaatgc
ctcgaaaacctggcttacgccggggcgttcgactcgatctcggatttcgcacgctgcaag
tatttcggcgtcgacctgcgcgattcgagcggcatcaccttcatcgagcagctgatgcgc
tacgggcagcggttccagaccgagcagaacaacgcccagcagagtctgttcggcggcggc
gagcacgtggacatccagcgcccggtgcttccggcctgcgccgactggagccagttggaa
aaactcacgaaggagcgcgaaatggtgggcctttacctctcggcgcacccgctcgacgat
tacaaaatcatcatcgaccacatgtgcaagacccagctttcggagctggagaacctcgac
gccctcaaggggcaggagatcgccgtggcgggcatggtcgtgggcgtgcagaacctgatg
accaagaccggcaagccgtggggcaagttcaaactcgaggactacaacggaggccacgag
ttcgccctcttcggcaaggactacgagaatttccgcaaataccttttcccggactatttc
ctcttcgtccggggccgcgtgcaggccaagccctacaacgacaaggagctggaattcaag
atcatttcgatggttcagttgcaggagatgcgcgacacgatcaaggagatgatcgtgcag
ctgccgatcgaggaggtgaccgaagcgttcatccacgacctgacggagagggtccgcgag
tcgaagggcgacacgctgctgcgcctgaacgtctacgaccgcggagcgcaggtctcgctg
cgcctcttctcgaaaagccacaaggtgagcctctcgcaatctctggtcggatatttggac
gacaacagcatccactactcaatcgcataa
DBGET
integrated database retrieval system
