Alistipes shahii: AL1_10830
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Entry
AL1_10830 CDS
T02578
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ash
Alistipes shahii
Pathway
ash03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ash00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL1_10830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ash03019
]
AL1_10830
03016 Transfer RNA biogenesis [BR:
ash03016
]
AL1_10830
Enzymes [BR:
ash01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AL1_10830
Messenger RNA biogenesis [BR:
ash03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AL1_10830
Transfer RNA biogenesis [BR:
ash03016
]
Prokaryotic type
tRNA degradation factors
AL1_10830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
RNase_II_C_S1
S1_RRP5
KH_Vigilin
KH-I_KHDC4-BBP
HutF_N
KH_2
Motif
Other DBs
NCBI-ProteinID:
CBK63594
UniProt:
D4IKY2
LinkDB
All DBs
Position
1217082..1219325
Genome browser
AA seq
747 aa
AA seq
DB search
MEEKKLYNAVRKIITLADGRQIEIETGKLAKQADGSVVVKMGDTMLLGTVVAAKDAKPDT
DFMPLQVEYKEKYAAVGRFPGGFMKREARANDSEVLVARLIDRALRPLFPADYHAEVYVT
VNLISADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVVRRNGEYAINPTYSEMPECD
LDIMVGGTIDNILMVEGEMKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKDVKRTY
CHEVNDEELRQTIIRELYDKAYAIATSGTMKHEREDKFNALEAEFAARYSEEELIEKAPL
IHKYFHDDVQKKAMRNMILDEGVRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSL
TTVTLGTKLDEKVKDEVLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRAL
KPMIPLGEDNPYAVRVVSDILESNGSSSMATVCAGTLALMDAGVKLRKPVSGIAMGLISD
SETGKWAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKG
RMHILGKLTECIAEPREDYKPCVPRIVQIVIPQDMIGPVIGPGGKVIQDIQKTTNTTITI
TEVDNKGIVDIFGIDKEALDGALARIKAIVAIPEVGETYHGKVRSIVAFGAFVEIMPGKD
ALLHISEIDYKRFETMEETGLKEGDEIDVKLIGVDPKTNKLKLSRKALLPKPEGYVERER
RPRPERGERGERRDRGERRERHEHKEE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaagctgtacaacgcagtccgcaagatcatcacgctggccgacggtcgc
cagatcgagatcgagacgggcaaactggccaagcaggccgacggctcggtcgtcgtcaag
atgggcgacacgatgctgctcggaaccgtcgtggccgcaaaggatgcaaaacccgacacc
gatttcatgcccctccaggtcgaatacaaggagaagtacgccgccgtaggccgcttcccc
ggcggtttcatgaagcgcgaagcgcgcgccaacgacagcgaggtgctcgtcgcccgcctg
atcgaccgcgccctccggcccctgttccccgcggattaccacgccgaagtctacgtgacg
gtcaacctcatctcggcggacaaggatattcagcccgacgcgctggccggtctggccgcc
tcggcggcgctggccgtatcggacattcccttcggcggccccatctcggaggtccgcgtc
gtacgccgcaacggcgaatacgccatcaaccccacctattcggagatgcccgaatgcgac
ctggacatcatggtcggcggtacgatcgacaacatcctgatggtcgagggcgagatgaag
gaggtttcggaagaggtgatgctcggcgccatcaagttcgcgcacgaggagatcaagaag
cactgcgccgtacagatcgagctgtcgaaggagttgggcaaggacgtgaaacgcacctac
tgccacgaggtcaacgacgaagaactgcgtcagacgatcatcagagagctttacgacaag
gcctacgccatcgccacgagcggcacgatgaagcacgagcgcgaagacaagttcaacgcg
ctcgaagccgagttcgcagcccgctattcggaagaagagctgatcgagaaggcgccgctg
atccacaaatatttccacgacgacgtgcagaagaaggccatgcgcaacatgatcctcgac
gaaggcgtccgtctcgacggccgcaagaccgacgagatccgcccgatctggtgcgaggtg
ggctacctgcccgcagcccacggctcggcgatcttcacccgcggcgaaacgcagtcgctg
acgaccgttacgctcggcacgaaactcgacgaaaaggtcaaggacgaggtgctcgtgcag
ggcaccgagcagttcgtgctccactataacttcccgcccttctcgacgggcgaagccaag
gccgcccgcggcctctcgcgccgcgaaatcggccacggccacctggcatggcgcgccctg
aagccgatgattccgctgggcgaggacaacccctacgccgtgcgcgtcgtgtcggatatc
ctcgagtcgaacggctcgtcgtcgatggccacggtctgcgccggaaccctcgcgctgatg
gacgccggcgtgaagctccgcaaacccgtgtcgggtatcgccatgggtctgatctccgat
tccgaaaccggcaaatgggccgtgctgtcggacatcctgggcgatgaggaccacctgggc
gacatggacttcaaggtgacgggaaccaaagacggcatcaccgccacgcagatggacatc
aaggtcgacggactctcctacgaggtgctggccgccgcgctggagcaggcccgcaaaggc
cgcatgcacatcctcggcaaactcaccgagtgcatcgccgagccgcgcgaggactacaag
ccctgcgtgccgcgcatcgtgcagatcgtcattccgcaggatatgatcggtccggttatc
ggcccgggcggaaaggtgatccaggacatccagaagaccaccaacaccaccatcaccatc
acggaggtggacaacaagggcatcgtggacatcttcggcatcgacaaggaggccctcgac
ggagcgctggcccgcatcaaggccatcgtggccatccccgaagtgggcgagacgtaccac
ggcaaagtccgctcgatcgtcgccttcggcgcattcgtcgagatcatgccgggcaaggac
gccctgctccacatctcggagatcgactacaagcgtttcgagaccatggaggagacgggt
ctgaaagagggcgacgagatcgacgtcaagctgatcggcgtagaccccaagaccaacaag
ctcaaactgtcgcgcaaggcgcttctgcccaagcccgaaggctatgtggaacgtgagcgc
cgtccgcgtcccgagcgcggtgagcgtggcgaacgccgcgaccgcggcgaacgccgggag
cgccacgagcacaaagaggaataa
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