Alistipes shahii: AL1_17250
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Entry
AL1_17250 CDS
T02578
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ash
Alistipes shahii
Brite
KEGG Orthology (KO) [BR:
ash00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ash03032
]
AL1_17250
03400 DNA repair and recombination proteins [BR:
ash03400
]
AL1_17250
Enzymes [BR:
ash01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AL1_17250
DNA replication proteins [BR:
ash03032
]
Prokaryotic type
DNA Topoisomerases
AL1_17250
DNA repair and recombination proteins [BR:
ash03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL1_17250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
MarR_2
Motif
Other DBs
NCBI-ProteinID:
CBK64109
UniProt:
D4IME7
LinkDB
All DBs
Position
complement(1977195..1979492)
Genome browser
AA seq
765 aa
AA seq
DB search
MQENLVIVESPAKAKTIEKFLGKDFIVKSSFGHIRDLAKKDLGINIGEGYKPVYEIPGDK
KKVVDELTKLAKSKTVWLASDEDREGEAIAWHLTEVLGLPVDRTKRIVFHEITKRAILEA
IEKPRTVNMDLVNAQQARRILDRLVGFELSPVLWKKVRPALSAGRVQSVAVRLIVERERE
IIAFRSAAYFRVVAQFYAAGDPEKTLFKAELSSRFETEAQAETFLQSCIGATFTVAKAEE
KPAQRYPAPPFTTSTLQQEAGRKLGMSVSQTMSVAQHLYEQGLITYMRTDSVNLSQQALA
QCKEEITKLYGEKYSRWFNYKTKTKGAQEAHEAIRPSYIERQEIEGTPAEKKLYDLIWKR
TVASQMVCAELDRTTITIDMSGSSNQFVAQGEVVRFDGFLRLYSESTDDDQAAESGEGLL
PKLTAGDRVLPSQITATERFTSAPARYNEASLVKRLEELGIGRPSTYAPTITTIINRGYV
VKQNRDGQKRNYAQLTLTGEKIASKTLSENYGKEKNRLSPTDIGMVVNDYLEEQFGPIID
YNFTASVEKEFDRIAEGDITWDKMIDEFYGPFHKMVDSAITTQTAKTREVRILGNDPKTG
HIVKARIGRYGPMVEIEGNEGEKGRFASLKKGQLIESITLEEALELFALPRDLGQLDGEE
LMVGIGKYGPYVRYGKSFASLAKTDDPYTIGYDRAVEIVRAHQAAAAAANTPMKSFPEDA
DMLVKNGRYGPYIAYKGKNYRLPKGAKPEELTLDDCLKIVAGSKK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaaatttagtaatcgtagagtcccccgccaaggccaagaccatcgagaagttt
ctcggcaaggactttatcgtaaaatcgagcttcggacacatccgcgaccttgcgaagaag
gatctcggcatcaatatcggagaaggctacaagcccgtatacgaaatccccggcgacaag
aagaaagtggtcgacgaactcacgaagctggccaagtcgaagaccgtctggctcgcctcc
gatgaggaccgcgaaggagaagccatcgcatggcacctgaccgaagtgttgggtctcccc
gtcgaccggaccaagcgcatcgtcttccacgaaatcaccaagcgggcgattctggaagcc
atcgagaagccgcgcacggtcaatatggacctggtcaacgcccagcaggcacgccgcatc
ctcgaccggctggtcggcttcgagctgtcgccggtgctgtggaagaaggtacgtccggcg
ctgtcggcaggccgcgtgcagtcggtcgccgtgcgcctgatcgtggagcgcgaacgcgag
atcatcgccttccgctcggcagcctatttccgtgtcgtggcccagttctacgccgccgga
gacccggagaagacgctcttcaaggccgaactttcgtcgcgtttcgagaccgaggcgcag
gccgaaaccttcctgcaaagctgcatcggcgccacattcacggtggccaaggccgaggag
aaacccgcacagcgctaccccgcgccgccgttcaccacctcgacgctccagcaggaggcg
ggccgcaagctgggcatgtccgtatcgcagacgatgtccgtcgcgcagcacctctacgag
cagggtctgatcacctacatgcgtaccgactcggtgaacctctcgcagcaggcgctggcc
cagtgcaaggaggagatcacgaaactctacggcgagaaatattcgcgctggttcaactac
aagaccaagaccaaaggtgcgcaggaggcccacgaggccatccgcccgtcgtacatcgag
cgtcaggagatcgagggcacgcccgccgagaagaaactctacgacctgatctggaagcgc
acggtcgcctcgcagatggtctgcgccgaattggaccgcacgaccatcaccatcgacatg
tcgggcagttcgaaccagttcgtcgcacagggcgaggtggtccgtttcgacggcttcctg
cgcctctactccgaatccacggacgacgaccaggctgccgagagcggcgaggggctgctg
ccgaaactcacggccggcgaccgggtcctcccgtcgcagatcaccgccacagagcgcttc
acctcggctccggcgcgctataacgaggcctcgctcgtcaaacgcctcgaagagctgggc
atcggccgtccttcgacctacgccccgacgatcaccacgatcatcaaccgcggctacgtc
gtcaaacagaacagggacgggcagaagcgcaactacgcacagctgacgctcacgggcgaa
aagatcgcctcgaagaccctctcggaaaactacggcaaagagaaaaaccgactttcgccg
accgacatcggcatggtggtcaacgattacctggaggagcagttcggcccgatcatcgac
tacaacttcacggccagcgtagagaaggagttcgaccgcatcgccgagggcgacatcacc
tgggacaagatgatcgacgagttctacggtcccttccacaagatggtcgattcggccatc
acgacgcagaccgccaagacgcgcgaagtgcgcattctgggcaacgatcccaagacgggg
cacatcgtgaaggcgcgcatcggccgttacggcccgatggtcgagatcgaagggaacgaa
ggcgagaagggacgcttcgcgtcgctcaaaaagggccagctgatcgagtcgatcacgctc
gaagaggcgctggagcttttcgccctgccccgcgacctgggacagctggacggcgaggag
ctgatggtcggcatcggcaagtacggaccctacgtgcgctacggaaagtcgttcgcgtcg
ctggcaaagaccgacgacccctacacgatcggctacgaccgcgccgttgagatcgtccgc
gcacaccaggcggccgcggccgcggccaacacgccgatgaagagtttccccgaagatgcc
gacatgctcgttaagaacggccgctacggaccctacatcgcctacaagggcaaaaactac
cgcctgccgaagggagcgaagcccgaggaactcaccctcgacgactgtctgaagatcgtc
gcaggatcgaaaaagtaa
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