Alistipes shahii: AL1_32070
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Entry
AL1_32070 CDS
T02578
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ash
Alistipes shahii
Pathway
ash03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ash00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL1_32070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ash03021
]
AL1_32070
03400 DNA repair and recombination proteins [BR:
ash03400
]
AL1_32070
Enzymes [BR:
ash01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL1_32070
Transcription machinery [BR:
ash03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL1_32070
DNA repair and recombination proteins [BR:
ash03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL1_32070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
CBK65271
UniProt:
D4IQQ9
LinkDB
All DBs
Position
complement(3678928..3683187)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSITKDNKPNNGYSRISIGLASPEEILAQSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVVHIWYFRSLPSKI
GYLLGIPSKKLEAIIYYERYVVINAGAASEQGIERLATLSEKEYLDVVAALPKGNQSLDD
SDPNKFVAMMGAEAVYTLLKQVDLDSMSYALRHKASTETSQQRKSEALKCLNVIESFRAS
EGKNKPEWMVLNVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSNAVKNESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHEMGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDRKDPVI
WGILENVIKGHPVLMNRAPTLHRLGIQAFQPKLIEGKAMQLHPLACTAFNADFDGDQMAV
HLPLGNAAILEAQLLMLGSHNVLNPANGAPITVPSQDMVLGLYYITKPRKGVKGEGRVFY
GAEEAIIAYNEGRADLHAIVKCMVDDLDEQGNEVRVLKETTIGRILFNQVVPKEVGYINE
ILTKRSLRDIIAVVMKKAGADKVAAFLDDIKNMGYRMAFRGGLSFNLDAVIIPEEKEKLV
QEGYERSDSIMEDYNMGLITNNERYNQIIDVWTNINTKLTKAVIETLIKDNDGFNPVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGVEGGQQVIENPILSNFKEGLSVLEYFISTHG
ARKGLADTALKTADAGYLTRRLVDVAQDVIINEEDCGTLRGLTATAIKRNDDVVQTLYDR
ILGRVALNDVIHPLTGEVICKAGEEITEPIAEAIEKSPLESVEIRSVLTCESRRGVCAKC
YGRNLATARMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGVAGGTAVETNVVSKYEGRL
EIDELRTVKGKNAAGEAIDIVISRQSEFRIVDPKTDIVLYTHNLPYGATLFMADGSEVKK
GDLICEWDPYNAVIISEYEGKASYESVIEGITYRDERDEQTGLSEKVVIESKDKTKNPVI
KIVDREGLEVKQYNLPVGAHVVVKDNARIKAGDILIKIPRAVGKSGGDITGGLPRVTELF
EARNPSNPAIVSEIDGEVAFGKIKRGNREIIITSKQGDVKRYLVPLSRQIIVQENDYVKA
GSPLSDGAITPSDILNILGPTKVQEYIVNEVQEVYRMQGVKINDKHFEVIVRQMMNKVKI
EDPGDTRFFEDQVVDKWEFMDVNDELYDKVVVTDAGDSTSLQPGQIVSLRKLRDENSSLK
RRDQQPVQVRDIVPATSTQVLQGITRAALQTSSFISAASFQETTKVLNEAAIQAKVDPLE
NLKENVICGHLIPGGTGLRDYDDLVVGSKADLESLQQAQ
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattaccaaagacaataaaccgaataatggttacagccggatttcgatcggcctg
gcctcccccgaggagattctggcccagtcgagcggcgaggtgctgaagcccgagaccatt
aactaccgtacctacaagcccgagcgcgacggtctgttctgcgaacggattttcggcccg
gtgaaggattacgagtgccactgcggtaagtacaagcgcatccgctacaaaggcatcgtc
tgcgaccgctgcggcgtggaggtgaccgagaagaaggtgcgccgcgagcgcatgggacac
atctcgctggtggttccggtggtgcacatctggtatttccgctcgctgccttcgaagatc
ggctacctgctgggcattccgtcgaagaaactcgaggcgatcatctactacgaacgttac
gtcgtgatcaacgccggcgccgcctcggagcagggcatcgagcgtctggccacgctttcg
gagaaggagtacctcgacgtggtggccgcgctgccgaagggcaaccagtcgctcgacgat
tcggaccccaacaagttcgtcgccatgatgggcgccgaggccgtctacacgctgctgaag
caggtggacctcgattcgatgtcctacgccctgcgccacaaggcctcgaccgagacctcg
cagcagcgtaagtcggaggcgctgaagtgtctgaacgtcatcgagtcgttccgcgcctcg
gagggcaagaacaagcccgagtggatggtgctgaacgtgattccggtgatcccgcccgag
ctgcgcccgctggtgccgctggacggcggacgtttcgccacgtcggacctgaacgacctc
taccgccgcgtcatcatccgcaacaaccgcctcaaacgcctgatcgagatcaaggccccg
gaggtgattctgcgcaacgagaagcgcatgttgcaggaggccgtcgactcgctgttcgac
aactcgcgcaagagcaacgccgtgaagaacgagtcgaaccgtccgctcaagtcgctgtcg
gattcgctcaagggcaagcagggccgcttccgccagaacctgctgggtaagcgtgtcgac
tactcggcccgttcggtcatcgtcgtcggtcccgagctgaagatgcacgagatgggcatt
ccgaaggacatggccgccgaactttacaagccgttcgtgatccgcaagctcatcgagcgc
ggcatcgtcaagacggtgaagtcggccaagaagatcatcgaccgcaaggaccccgtgatc
tggggcattctggagaatgtcatcaagggacaccccgtgctgatgaaccgcgccccgacg
ctgcaccgcctcggtatccaggcgttccagcccaaactgatcgagggcaaggccatgcag
ctgcacccgctggcatgtacggcgttcaacgccgacttcgacggcgaccagatggccgtg
cacctgccgctgggcaacgccgccatcctggaggcccagctgctgatgctgggttcgcac
aacgtcctcaatcccgcgaacggcgcgccgatcacggtcccttcgcaggacatggtcctc
ggtctctactacatcaccaagccccgcaagggcgtgaagggcgaaggccgcgtattctac
ggcgccgaggaggcgatcatcgcctacaacgagggccgggccgacctgcacgccatcgtg
aagtgtatggtcgacgacctggacgagcagggtaacgaggtgcgcgtgctgaaggagacg
accatcggccgcatcctcttcaaccaggtggttcccaaggaggtgggttacatcaacgag
attctgacgaagcgttcgctgcgcgacatcatcgccgtggtgatgaagaaggccggtgcc
gacaaggtggccgcgttcctcgacgacatcaagaatatgggttaccggatggccttccgc
ggcggtctgtcgttcaacctcgatgccgtgatcatccccgaagagaaggagaagctcgtg
caggagggctacgaacgttcggactccatcatggaggactacaacatgggtcttatcacc
aacaacgagcgttacaaccagatcatcgacgtctggacgaatatcaataccaagctgacg
aaggccgtgatcgaaacgctgatcaaggacaacgacggtttcaacccggtatacatgatg
ctcgactccggcgcccgtggttcgaaggagcagatccgtcagttgagcggtatgcgcggt
ctgatggccaagccgcagaagtcgggcgtcgagggtggccagcaggtcatcgagaacccg
attctctcgaacttcaaggagggactttcggtgctggagtacttcatttcgacccacggc
gcccgtaagggtcttgccgacaccgccctgaagacggccgacgcaggttacctgacgcgc
cgtctggtggatgtggcgcaggacgtgatcatcaacgaggaggactgcggcacgctgcgc
ggcctgacggctacggccatcaagcgcaacgacgacgtggtgcagaccctctacgaccgt
attctgggccgtgtggccctgaacgacgtgattcacccgctgaccggcgaggtgatctgc
aaggccggcgaggagatcaccgagccgatcgccgaagccatcgagaaatcgccgctggag
tcggtggagatccgttcggtgctgacctgcgagtcgcgccgcggcgtctgcgcgaagtgc
tacggccgcaacctggccacggcccgcatggttcagaagggcgaggtcgtcggcgtcatc
gccgcgcagtccatcggcgagccgggtacgcagctgaccctgcgtacgttccacgtcggc
ggtgtggccggcggcacggctgtcgagaccaacgtcgtttcgaaatacgaaggccgtctg
gagatcgacgagctgcgcaccgtcaagggcaagaatgcagccggcgaggcgatcgacatc
gttatttcgcgtcagtcggagttccgcatcgtcgaccccaagaccgacatcgtcctctat
acgcacaacctgccctacggcgcgacgctcttcatggcggacggctccgaggtcaagaag
ggcgacctgatctgcgagtgggacccctacaacgccgttatcatttcggagtacgagggt
aaggcctcctacgagagcgttatcgagggtatcacctaccgcgacgagcgcgacgagcag
acgggcctttcggagaaggtcgtgatcgagtcgaaggacaagaccaagaaccccgtcatc
aagatcgtcgaccgcgaaggtctggaggtcaagcagtacaacctgcccgtgggcgcccac
gtggtcgtgaaggacaacgcccgcatcaaggccggcgacatcctgatcaagattccgcgc
gccgtcggcaagtcgggcggcgacatcaccggcggtctgccgcgtgttacggagctgttc
gaggcccgcaacccgtcgaaccccgccatcgtatcggagatcgacggcgaggtggcgttc
ggcaagatcaagcgcggtaaccgcgagatcatcatcacctcgaagcagggcgacgtgaaa
cgctatctggttcccctgtcgcgtcagatcatcgtgcaggagaacgactacgtgaaggcc
ggcagcccgctgtcggacggtgcgatcaccccgagcgacatcctcaatatcctcggcccg
acgaaggtgcaggagtacatcgtcaacgaggtgcaggaggtgtaccgcatgcagggtgtg
aagatcaacgacaagcacttcgaggtcatcgtccgccagatgatgaacaaggtgaagatc
gaggacccgggagacacccgtttcttcgaggatcaggttgtcgacaagtgggagttcatg
gatgtgaacgacgagttgtacgacaaggtggtcgtcaccgacgcgggcgattcgacatcg
ttgcagcccgggcagatcgtttcgctgcgtaagctgcgcgacgagaattcgagcctcaag
cgccgcgaccagcagccggtgcaggtgcgcgacatcgtgcccgcgacttcgacccaggtg
ttgcagggtatcacccgcgccgcactccagacttcgagcttcatctcggcggcttcgttc
caggagacgaccaaggtgctgaacgaggcggccatccaggccaaggtcgatccgctggag
aacctcaaggagaacgtgatctgcggtcacctgatccccggcggtacgggcctgcgcgac
tacgacgacctcgtagtcggttcgaaggccgatctggagtcgctccagcaggcgcagtag
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