Acinetobacter shaoyimingii: G8E00_13925
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Entry
G8E00_13925 CDS
T07106
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asha
Acinetobacter shaoyimingii
Pathway
asha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8E00_13925 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asha03019
]
G8E00_13925 (rnr)
03016 Transfer RNA biogenesis [BR:
asha03016
]
G8E00_13925 (rnr)
Enzymes [BR:
asha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G8E00_13925 (rnr)
Messenger RNA biogenesis [BR:
asha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G8E00_13925 (rnr)
Transfer RNA biogenesis [BR:
asha03016
]
Prokaryotic type
tRNA degradation factors
G8E00_13925 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QIO06956
UniProt:
A0A6G8RYC9
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All DBs
Position
3074440..3076962
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AA seq
840 aa
AA seq
DB search
MKNWVDPEAKAEAERYDNPIPSRVLILETIENKKQPLSHSEFVEIFEIADQKSIEALSHR
LSAMVRDGQLMKDGFKFQLMADQPTFDATVYINSKGLGSASLDGKKDEMLLPERELRQVF
HGDRVKVQQTSVDRKGKAWGFITEITQRRVKQVIGKLAEFEGEFFIQPAAPNAHQPIPLE
KELVEHATVKVGDFVRVEIDDYPTRDEFATAHIVQSMADKADTEIIIPQTILEFGLPFEF
PEAVIKEAENFKEPNAKDIQGRIDLRNLPLVTIDGEDARDFDDAVYAEKRPGGGYRVVVA
IADVSHYVRTDKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPSVDRLCMVCDLK
LSRAGKVTGYEFYPSVMHSKARLTYDKVAQYFEGDSAAITEDRDVRKSLNTLFQLYQTLK
GLRAERHAMEFETVETYMTFDELGGIKEILPRSRNEAHKLIEECMLLANVAAAEYALKND
IPMLYRVHEPPEFSRIQKVRDFVKLLGLTFPEQPTQKDYQAVIEATKDRIDAPSIHSVLL
RSMMQAYYGPNNAGHFGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQHKPSPLSGGALEE
AGTHFSATERRADEASRSVTTWLKCHYMKQHIGEEFVGSISATAEFGLFVTLKDLYVDGM
VHVSQLGDDYFVYDQASQSLVGQNRGQVFSLGDDVRIKVAGVNLEERKIDFELIQQLSHG
GRAIRSRAPRVAKESVKPTGRPNTSQANPTAQRQNTRTATKPITKEEVFDRMFKEASEII
TIEDDRQPVRKKKAKSKPVNSAKKAEKKSTAKSAEAKAKDKAKKKAKAKKKKANAKSKLD
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaattgggtcgaccctgaagctaaagcggaagctgaacgttacgataatcctatt
ccaagccgtgttcttattttggaaacgattgagaataaaaaacaacctctctcccattct
gagtttgtcgaaatttttgaaattgccgatcaaaaaagtattgaggctttgagccatcgt
ttaagcgcaatggtgcgtgatggccaattgatgaaagatggatttaaatttcagctaatg
gctgatcaacctacctttgatgcgacggtttatatcaattcaaaaggtttaggttctgca
agcttagacggcaaaaaagatgaaatgctattgcctgagcgcgaattgcgccaagtgttt
catggtgaccgtgtcaaagtacaacaaacgtctgtagaccgtaaaggaaaagcttggggc
tttattacagaaatcacgcaacgtcgtgtcaaacaagtgattggcaaattggcagaattt
gaaggtgaattctttattcaaccagcagcaccaaacgcacatcaaccgattccacttgaa
aaggagttggttgaacatgcaactgtcaaagttggggactttgtacgtgttgaaatagat
gactatccaacccgtgatgaatttgcaacggcacatattgtgcaatctatggcagataaa
gcggatactgaaatcattattccacaaacgattttagaatttggattgccttttgagttt
ccagaagcagttattaaggaagctgaaaactttaaagaaccgaatgccaaagacattcaa
ggtcgaattgacttacgtaatttgcctttagtaactattgatggtgaagatgcacgtgac
ttcgacgatgctgtatatgctgaaaaacgtccaggtggtggttaccgtgtcgtggttgca
attgccgatgtcagccattatgtacgcacagacaagcctttagatgatgaagcgcaagag
cgtggtacctctgtgtacttccctcactttgttttaccgatgcttcctgaagcactctca
aatggcttatgttctttaaatccgagcgttgaccgtctttgtatggtctgtgatttaaaa
ctgtctcgtgcaggtaaagtgaccggttatgagttctacccttcggtgatgcattcaaaa
gcacgtttaacctatgacaaagttgcacagtactttgaaggtgatagcgctgcgattact
gaagatcgagatgttcgaaaatccttaaatacattgttccaactttatcaaacactcaaa
ggcttacgtgctgaacgtcatgcgatggagtttgaaacggttgaaacctatatgaccttt
gatgagcttggcggtattaaagaaattctgccacgtagccgtaacgaagcgcataaattg
attgaagaatgtatgttgcttgctaacgttgctgcagctgaatatgcactgaaaaatgat
attccaatgctgtaccgtgtgcatgagccaccagagttttcacgcattcaaaaagtgcgt
gattttgtgaagcttttgggactcaccttccctgaacagccaacgcaaaaagattatcaa
gccgtgattgaagcaaccaaagatcgtattgatgcaccaagcattcactcggtactttta
cgttcaatgatgcaagcatattatggtccaaataacgcaggtcactttggcttggcttat
gaagcctatacacatttcacatcaccaattcgtcgttaccctgatcttttgttacatcgt
gcaattaaagcacatttgcaacacaagccttctccgctttcaggtggtgctttagaagaa
gcaggtacacatttctctgcgactgagcgtcgtgcagatgaagcttctcgttctgtaacg
acatggttgaaatgtcactacatgaagcaacatattggtgaggaatttgttggttcaatc
agtgcaacagctgaatttggcttatttgtgaccctgaaagatctctatgtcgatggcatg
gttcatgtcagccaactcggtgatgactacttcgtttatgatcaagcaagtcaaagcttg
gtaggtcaaaaccgcggtcaagtgtttagcttaggtgatgatgtccgtattaaagttgct
ggtgtcaatcttgaagagcgtaaaattgactttgagttaattcaacaactcagtcatggt
ggtcgcgcaattcgcagtcgtgctccacgtgtagcaaaagaaagcgtaaaaccaacgggc
agaccaaatacctctcaagcgaatccaacagcgcaaagacagaacaccagaactgcgacc
aaaccgattactaaagaagaagtctttgaccgtatgtttaaagaagcttctgagatcatt
accattgaagatgatcgtcaacctgttcgtaagaaaaaggcgaaatctaaacctgtaaat
tctgcaaaaaaagcagagaaaaaatcgactgctaagtctgctgaagcgaaagcaaaagac
aaggctaagaaaaaagctaaggccaaaaagaaaaaggccaatgcaaaatccaaacttgat
taa
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