Acidithiobacillus sibiricus: R4T48_04170
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Entry
R4T48_04170 CDS
T11923
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
asib Acidithiobacillus sibiricus
Pathway
asib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R4T48_04170 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asib03021
]
R4T48_04170 (rho)
03019 Messenger RNA biogenesis [BR:
asib03019
]
R4T48_04170 (rho)
Transcription machinery [BR:
asib03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
R4T48_04170 (rho)
Messenger RNA biogenesis [BR:
asib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R4T48_04170 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_22
ATPase_2
AAA
AAA_16
Spore_III_AA
AAA_5
Motif
Other DBs
NCBI-ProteinID:
YDX97104
LinkDB
All DBs
Position
complement(845396..846766)
Genome browser
AA seq
456 aa
AA seq
DB search
MNAPRPRRKPQRSPKSFPNEDLLLEEEESFTPVPGAPSVNLSELKRKSATELALLCQDLG
IDGAARQKKQELIFNILKAHARNGDAIYGDGVLEILQDGFGFLRAASGSYMAGPDDIYVS
PSQIRRFNLQTGDTVSGQIRPPKEGERYFALLKVESINFEGPEATRNKVNFDDLTPLFPE
EALRLESDHMVYGEPSARIIDLISPIGKGQRGLIVAPPKTGKTVLLQQIAHAITGNHPEC
YLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHVQVAEIVLEKAKRLVEHKHDVVI
LLDSITRLARAYNTVVPSSGKVLTGGVDANALQKPKRFFGAARNIEEGGSLTIIATSLVE
TGSKMDEVIFEEFKGTGNMEVHLDRRLAEKRVYPAINLNKSGTRREELLIPQELLNKIWV
LRKLLAPMDPMESMEFLLDKVRATKTNAEFFDSMNR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
ttgaatgctccaagaccccgccgcaagccgcaacgttcccccaaatctttccccaatgaa
gaccttcttctagaagaggaggagtccttcactccagttcccggggctccctcggtcaac
ctcagcgaactgaaaagaaaatcggccacggagctggcgctcctgtgccaggacctgggg
atcgatggggcggccaggcagaagaaacaagaactgatcttcaatatcctcaaggcccat
gcacgcaatggcgatgccatttatggcgatggggtgctggaaatcctgcaggatggtttc
ggctttttgcgcgcggcatcgggctcgtatatggcgggaccggacgacatctatgtctcg
ccctcgcagatccgtcgcttcaacctgcagacgggggataccgtttccgggcagattcgc
ccgcccaaggagggagaacgctactttgccttgctcaaggtggagagcatcaacttcgag
gggccggaggcaacccgcaacaaggtcaattttgatgatctgacgccattgtttccggaa
gaggccctgcgcctggagtcggatcatatggtctatggtgagccttcggcgcgcatcatc
gatctgatctccccgatcggcaagggacagcgtggcctcatcgtggccccgcccaaaacc
ggcaaaacggtattgttgcagcagatcgcccatgccatcaccggtaatcatccggaatgc
tatctgatcgtactcttgatcgacgagcgcccggaggaagtgacggagatgcagcgttcg
gtgaagggtgaggtggtgtcctcgaccttcgatgagcccgctacccgccatgtgcaggtc
gccgaaatcgtcctggaaaaggccaagcgtctggtggaacacaagcatgacgtggtgatt
ctgctcgattccattacccgtttggcgcgcgcctacaataccgtcgtgccctcttcgggt
aaggtgctcaccggtggcgtcgatgccaacgccctgcaaaagccgaagcgcttttttggt
gcggcgcgcaatatcgaggagggcggcagcctgaccatcatcgccacctcgttggtggaa
accggttccaagatggacgaagtgatcttcgaggagttcaagggcaccggcaatatggaa
gtgcacttggatcgccgccttgccgagaagcgcgtctacccggccatcaatctgaacaag
tccggtacccgtcgcgaagaactgctcattccgcaggagcttctcaacaagatctgggta
ctgcgcaagctgctggcacccatggatcccatggaatcgatggaatttctgttggacaag
gtgcgagcgaccaagaccaatgcggaattcttcgattccatgaatcgctga
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