Aeromonas simiae: FE240_07920
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Entry
FE240_07920 CDS
T07073
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asim
Aeromonas simiae
Pathway
asim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE240_07920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asim03019
]
FE240_07920
Enzymes [BR:
asim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE240_07920
Messenger RNA biogenesis [BR:
asim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE240_07920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
HEM4
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
QFI54631
UniProt:
A0A5J6WWR3
LinkDB
All DBs
Position
complement(1672967..1674295)
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AA seq
442 aa
AA seq
DB search
MTFRDLGLSPHLLRAIEELGYTSPTPIQQEAIPAVLAGKDVLGGARTGTGKTAGFALPML
NNLLLNHGRGRRQVRALILAPTRELAAQVGKQVDDYARHLPLRVLTVYGGVIIKPDIEAI
KKGVDVLVATPGRVLDLLSQKALTFERLEVLVLDEADRMLDMGFIRDIERILRTLPSERQ
SLLFSATFNDEIKALAGELLRDPVLIEVDPANTTADKVRQRVIRVDRERKRELLAHLIQS
EQWQQALIFARTRHIADRLAKQLERDGLEATAIHGEKSQAVRNAAMEAFRRGELRILVAT
DIAARGLDIDQLEHVVNFEPPQSPEDYVHRIGRTGRAGRGGEAISLICREELGQLQQIER
FLGESLETEQVPGFEPSGKPTRQTLPGSKPVQNPPRKGKKPAAKPAKTAKPAATARRDKD
ADEVGFMPVRRQARVRIEESDD
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcgcgatctcggtctttccccccacctgctgcgcgccatcgaggagctcggc
tacaccagccccaccccgatccagcaagaggccattcctgccgtgctggcgggcaaggac
gtgctgggcggggcgcgcaccgggaccggcaagaccgccggctttgccctgccgatgctc
aacaacctgctgctcaaccacggccgtggccggcgccaggttcgcgccctgatcctggcc
ccgacccgcgagctggccgcccaggtgggcaagcaggtcgatgactatgcccgccacctg
ccgctgcgggtgctcaccgtctatggcggggtgatcatcaagcccgatatcgaggcgatc
aagaagggggtcgacgtgctggtcgccaccccgggccgggtgctcgatctgctgagccag
aaggccctcaccttcgagcgcctcgaggtgttggtgctcgacgaagcggatcggatgctc
gacatgggctttatccgcgacatcgagcgcatcctgcgcaccctgccaagcgagcgccag
agcctgctcttctcggccacctttaacgacgagatcaaggcgctggctggcgaactgctg
cgcgatccggtgctgatcgaggtcgatccggccaacaccaccgccgacaaggtgcgccag
cgggtgatccgggtcgaccgcgaacgcaagcgtgaactgctcgcccacctgatccagagc
gaacagtggcaacaggcgctgatcttcgcccgcacccgccacatcgccgaccgactggcc
aagcagctcgagcgcgacggtctcgaagccaccgccatccatggcgagaagagccaggcg
gtgcgtaacgccgcgatggaggcatttcgccgtggtgagctgcgcatcctggtggccacc
gacatcgccgcccgtggcctcgacatcgatcagctcgagcatgtcgttaacttcgagccc
ccccagagcccagaggactatgtgcaccgcatcggccgcaccggtcgtgccggccgcggt
ggtgaggccatctcgctcatctgtcgcgaggagctgggtcagttgcagcagattgaacgc
ttcctcggtgaatccctcgagaccgagcaggtgccgggttttgagcccagcggcaaaccg
acccgccagaccctacccggcagcaagccggtgcaaaacccgccccgcaagggcaagaaa
cccgccgccaaaccggccaagacggccaaacccgccgccacggcgcgccgcgataaggat
gccgacgaggtgggcttcatgccggtacgccggcaggcgcgggtgcgcatcgaagagagt
gacgactaa
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