Aeromonas simiae: FE240_09185
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Entry
FE240_09185 CDS
T07073
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asim
Aeromonas simiae
Pathway
asim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE240_09185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asim03019
]
FE240_09185
Enzymes [BR:
asim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE240_09185
Messenger RNA biogenesis [BR:
asim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE240_09185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QFI54843
UniProt:
A0A5J6WYN8
LinkDB
All DBs
Position
complement(1941003..1942391)
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AA seq
462 aa
AA seq
DB search
MQFESLGLSAPLLRAVAEQGYTTPSPIQQKAIPVVLEGRDLMAAAQTGTGKTAGFTLPML
QRLTESQRRVSPNQVRALVLAPTRELAAQVGESVREYGKHLPVRSHVVFGGVSINPQMMA
MRRGLDVLVACPGRLLDLYNQKAVRFDELEILVLDEADRMLDMGFIRDIRKILALLPKKR
QNLLFSATFADEIRELATGLLNDPAVVEVAPRNSTAERIEQLVHPVDKANKIPLLTHLVK
SNDWQQVLVFTRTKHIANRVAEKLEKEGVTAAAIHGNKSQGARTRALAGFKDGSLRVLVA
TDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGSAGHAISLVSADEGKLIKGIE
RLIKQTIDKQPVAGFEPSRETQEAIAKGIGQPPRKEPREPGEQRQAPRRPQAPRGEGQPR
REGAGAPRGNNGGNRQGKPAGQRSGQGAAGGRHKPATRSGNR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaatcactgggcctgagtgccccgctgctgcgtgccgtggccgagcaaggc
tataccactccgtccccgatccagcagaaggccatcccggtcgtgctcgaagggcgcgat
ctgatggcagccgctcagaccggtaccggcaagaccgccggctttaccctgccgatgttg
cagcgtctgaccgagagccagcgccgcgtctccccgaaccaggtacgcgccctggtgctg
gccccgacccgcgagctggccgcccaggtgggcgagagcgttcgcgagtatggcaagcac
ctgccggttcgcagccacgtggtgttcggcggggtcagcatcaacccgcagatgatggcc
atgcgccgtggtctggacgtgctggtggcctgcccgggccgcctgctcgatctctataac
cagaaggcggtgcgtttcgacgagctggagatcctggtgctcgacgaagcggatcgcatg
ctcgacatgggctttatccgcgacatccgcaagatcttggccctgctgccgaaaaagcgt
cagaacctgctgttctccgccaccttcgccgacgagatccgcgagctggccaccggcttg
ctcaacgatccggccgtggtcgaggtcgctccgcgcaacagcaccgccgagcgcatcgag
cagttggtgcatccggtcgacaaggccaacaagatcccgctgctgacccatctggtgaag
agcaacgactggcagcaggtattggtctttacccgtaccaagcacattgccaaccgggtg
gccgagaagctggaaaaagagggcgtcaccgccgccgccattcacggcaacaagagtcaa
ggggcccgtacccgcgccctggccggttttaaggatggctctttgcgcgtgctggtggcg
accgacatcgccgcccgcggtctcgacatcgataagctgccgcaggtggtcaacttcgag
ctgccgaacgtggccgaggactatgtgcaccgtatcggtcgtaccggtcgtgccggctct
gccggtcacgccatctcactggtgagcgccgatgaaggcaagctcatcaaggggatcgag
cgcctcatcaagcagaccatcgacaagcagccggttgccggctttgagccctcccgtgag
acccaagaggccatcgccaaggggattggccagccgccgcgcaaggagccccgtgagccg
ggcgagcagcgccaggcaccgcgtcgcccgcaggccccccgtggtgaaggtcagccgcgc
cgtgaaggggcaggcgccccgcgtggcaacaatgggggtaaccgccagggcaaaccggca
ggtcagcgcagcggccagggggctgccggtgggcggcacaagcctgccacgcgcagcggc
aatcgctga
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