Aeromonas simiae: FE240_09650
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Entry
FE240_09650 CDS
T07073
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asim
Aeromonas simiae
Pathway
asim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE240_09650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asim03019
]
FE240_09650
03009 Ribosome biogenesis [BR:
asim03009
]
FE240_09650
Enzymes [BR:
asim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE240_09650
Messenger RNA biogenesis [BR:
asim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE240_09650
Ribosome biogenesis [BR:
asim03009
]
Prokaryotic type
rRNA helicases
FE240_09650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_19
RRF_GI
WH_MCM3_C
Importin_rep_6
Motif
Other DBs
NCBI-ProteinID:
QFI54921
UniProt:
A0A5J6WXJ1
LinkDB
All DBs
Position
complement(2037985..2039856)
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AA seq
623 aa
AA seq
DB search
MSDTEHLPLFDELGLAAPILKALHDVGYERPSPIQAAAIPPLLAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGSRSTQILVLAPTRELAIQVSEACQRYASHMPDFQVLPIYGGSSYDTQ
IRALRRGAQVVVGTPGRVMDLIRRKSLDLSGLRALVLDEADEMLRMGFIDDVDWIMEQCP
AGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGSHKLEAMTR
LLEVESYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVEKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
SIEHATRQSIEPMKMPTMADINQHRLTKFKERIRETMMGEELETYYELVNELVQEESVDP
IELAAALAKLVQGDQPLLLDESKPDPLLSQPSREFERRDQRDFGDRDFNRGDRPARRMPG
LEPRPLKDNPDVKMERFRVDVGAHHGVKPGQIVGAIANEANLESRFIGNIEIADDFSTVD
LPKGMSAEVMEVIKKARVCQRPLMITPYTEVPEGTRSAAPRQFRDRPFNKERRPFNKDRR
EGNREGGFDKGRKFGNKRREHNS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacatctgcccctttttgacgagcttggattggccgcgcccattttg
aaggcgctgcacgacgtgggctacgagcgcccgtcccccatccaggccgccgccattccg
ccactgctggcgggccatgatctgctggggcaggcgcagactggtaccggcaagacggcg
gcctttgcgttgccgctgctctcccgccttgaggcaggcagtcgctccacccagatcctg
gtgctggcgccgactcgtgaactggccattcaggtttccgaggcgtgccaacgctacgcc
agccacatgcctgatttccaggtgctgcccatctacggtggctcctcctatgacacccag
atccgcgccctgcgccgcggtgcccaggtggtcgtcggtactccgggccgcgtcatggac
cttatccgccgcaagagcctggatctctccggtctgcgtgccctggtgctggacgaggcg
gacgagatgctgcgcatgggcttcatcgacgacgtcgactggatcatggagcagtgcccg
gctggccgtcaggtagccctcttctccgccaccatgccggagcagatccgtcgtgtggct
cagaagcacctgaagcagcccaaagagatcaagatcgcctccaagaccgcgaccgcgacc
accatccgtcagcgctactggcaggtgaccggctcccataagctggaagccatgacccgt
ctgctggaagtggaatcctacgaagccctgctggtgttcgtgcgcaccaagaatgcggcc
gaagaactggccggcaagctggctgcccgtggtcacgcctgtgaagcgctgcatggtgac
atcccgcagaagctgcgtgagcgtaccgtcgagaagctgcgccaaggccagctggacatc
ctgatcgctactgacgtggtagcccgtggtctggacgtcgagcgcatcacccacgtggtg
aactacgacattccgtacgacaccgagtcctacgtgcaccgtatcggccgtaccggccgt
gccggtcgtaagggtgaggctatcctgttcgtggccccgcgcgagcgccgcatgctgcgt
tccatcgagcacgcaacgcgtcagagcatcgagccgatgaagatgccgaccatggccgac
atcaaccagcaccgcctgaccaagttcaaggagcgcatccgcgaaaccatgatgggtgag
gagctcgagacctattacgaactggtcaacgagctggtacaggaagagtccgtcgatccg
atcgagctggccgctgccctggccaagctggtgcagggtgatcagccgctgctgctcgac
gagtccaagccggatccgctgctctcccagccgtcgcgcgaatttgagcgccgtgatcag
cgtgacttcggtgatcgcgatttcaaccgtggcgatcgcccggcccgtcgtatgccgggt
ctggagccgcgtccgctcaaagacaatcctgacgtgaagatggagcgcttccgtgttgac
gtgggtgcccatcacggcgtcaagccgggccagattgtcggcgccatcgccaacgaagcc
aacctcgagagtcgcttcatcggtaacatcgagatcgccgatgacttctccaccgtcgat
ctgcccaagggcatgagcgccgaagtgatggaagtgatcaagaaggcgcgtgtctgccag
cgtccgctgatgatcacgccctacaccgaagtgccggaagggacccgcagcgccgctccg
cgtcagttccgcgatcgccccttcaacaaggagcgtcgtcccttcaacaaggatcgccgc
gaaggcaatcgtgaaggtgggttcgacaagggccgcaagtttggtaacaagcgccgcgag
cacaacagctaa
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