Aeromonas simiae: FE240_15280
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Entry
FE240_15280 CDS
T07073
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
asim
Aeromonas simiae
Pathway
asim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
asim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FE240_15280 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asim03021
]
FE240_15280 (rpoD)
Transcription machinery [BR:
asim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FE240_15280 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
AROS
Cwf_Cwc_15
CENP-B_dimeris
Motif
Other DBs
NCBI-ProteinID:
QFI55929
UniProt:
A0A5J6WXK8
LinkDB
All DBs
Position
3203331..3205193
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AA seq
620 aa
AA seq
DB search
MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQIEDIIQMINDMGIQVVENAP
DADDLIMTDATADEDAAEAAAQALASVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQSSVAEYPEAITYLLEQYDKFEAEQLRLSDIISGFVNPDEADEMGPSATH
IGSELGEDDLADEDSSDDEEEDEDEDGNDSSDDDSDGGPDPEVAREKFAELRTQYEVTRQ
SIRTNGRAHDETQAEIAKLADIFRQFRLMPKQFDRLVNNMREMMERVRVQERIILKLCVE
QAKMPKKTFVSAFTNNECETAWFEYQKQAGKAWSAPLVAMEEEVLRSIGKLQQIEEETGL
SIAQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
MGREPSPEELAIRMGMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLALPAD
AATSESLRNATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSEVLRSFLDE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaccccgcagtcgcagcttaaactcctcgtcgccaaaggtaaagaacagggc
tacctgacctatgccgaggtgaacgaccacctgccgcaggacatcgtcgactccgatcag
atcgaagacatcattcagatgatcaacgacatgggtatccaagtggtggaaaacgcccct
gatgccgacgacctgatcatgaccgatgccactgctgatgaggatgcggccgaagccgca
gcccaggcactggcctctgttgaatccgagattggccgtaccaccgatccggtccgcatg
tacatgcgggaaatgggtaccgttgaactgctgacccgcgaaggtgaaatcgacatcgcc
aagcggatcgaagacggcatcaaccaggtacaaagctccgtggcagagtacccggaagcc
atcacctacctgctcgagcagtatgacaagttcgaggcagagcagttgcgcctgtctgac
atcatctccggtttcgtcaacccggatgaggcggacgagatgggtccttccgcgactcac
atcggttccgagctgggcgaggatgaccttgccgacgaagacagctccgacgatgaagaa
gaggacgaggacgaagacggcaacgacagcagtgatgatgacagcgacggtggcccggat
ccggaagtcgctcgcgagaagtttgccgagctgcgcacccagtacgaagtgacccgtcag
tcgatccgcaccaacggtcgcgctcacgacgagacccaggctgagattgccaagctggcc
gacatcttccgccaattccgcctgatgcccaagcagttcgatcgcttggtcaacaacatg
cgcgagatgatggagcgcgtgcgcgtgcaagagcgcatcatcctgaagctgtgcgtcgag
caggccaagatgccgaagaagaccttcgtcagcgccttcaccaataacgagtgcgagacc
gcctggttcgaataccagaagcaagccggcaaggcgtggtctgctccgctcgtggccatg
gaagaagaggtgctgcgctctattggcaaattgcagcagatcgaagaagagaccggtctt
tctatcgcccagattaaagacatcaaccgccgcatgagcatcggtgaggccaaggcccgc
cgcgccaagaaagagatggttgaggccaacttgcgtctggttatctcgatcgccaagaag
tacaccaaccgcggtctgcaattcctggatctgatccaagaaggcaacatcggtttgatg
aaggccgtcgataagttcgaataccgtcgtggctacaagttctcgacctatgcgacctgg
tggatccgtcaggccattacccgctccatcgcggatcaggccagaaccatccgtatcccg
gttcacatgattgagaccatcaacaagctcaaccgtatctctcgtcagatgctgcaagag
atgggtcgtgaaccaagtccggaagagctggctattcgcatgggtatgccggaagacaag
atccgcaaggtgctgaagattgccaaggagcctatctcgatggagacccccatcggtgat
gacgaagactcccatcttggcgacttcatcgaggataccaccctcgccctgccggctgat
gcggccaccagtgagagcctgcgcaacgccactcgcgaagtgctggctggcctgaccgca
cgggaagccaaggtgctgcgcatgcgcttcgggatcgacatgaacactgaccacaccctt
gaggaagtgggcaagcagttcgacgtgacccgcgagcgtatccgtcagatcgaagccaag
gcgctgcgtaagctgcgtcacccgagccgctccgaggtgctgcgtagcttcctcgacgag
taa
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