Aeromonas simiae: FE240_18055
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Entry
FE240_18055 CDS
T07073
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
asim
Aeromonas simiae
Pathway
asim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE240_18055 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asim03019
]
FE240_18055 (rhlB)
Enzymes [BR:
asim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE240_18055 (rhlB)
Messenger RNA biogenesis [BR:
asim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE240_18055 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFI56415
UniProt:
A0A5J6X3J0
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All DBs
Position
complement(3780896..3782179)
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AA seq
427 aa
AA seq
DB search
MSKTHLTDEKFAQMGLEPEVLAGLEAKGFHYCTPIQALSLPLLVEGHDIAGQAQTGTGKT
IAFLAATFNYLLTHPLTTPRLINQPRAIIMAPTRELAVQIHKDAESMAASTGLKLGLAYG
GEGYDKQLAVLEQGVDILVGTTGRIIDYYKSKVIDLANIQVVVLDEADRMFDLGFIKDIR
FLFRRMPAAGDRLNMLFSATLSLRVQELAYEHMTNPHHVQVEPEQMTGVRIKEELFYPSN
EDKMLLLLTLMEEEWPDKAIVFANTKHCCEDIHAWLEADGHRVGLLTGDVPQKKRMKILE
EFTQGKLDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLA
CEDYAFNLPAIEEYIRHPIPVSKYDREALLTDVTPPRRVQRNRPPVNRNMRDRQGGGGNR
RRPPKRT
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaactgacgaaaaattcgcccaaatgggcctcgaacctgaagtg
cttgcaggtctggaagccaaaggatttcactactgtacaccgatccaggcactatcactg
ccactgctggtcgaaggccatgacatcgcaggccaggctcagacaggtacaggtaaaacc
atcgccttcctcgccgccaccttcaattatcttctcacccatccgctgaccactccccgc
ctcatcaaccagccgcgcgccatcatcatggctccgacccgtgagctggcggtgcagatc
cataaggacgccgaaagcatggcggctagcaccggcctgaaactggggctggcttatggt
ggcgaaggctacgacaagcagcttgccgtactggagcaaggggtcgacatcctggtcggc
accacgggtcgcatcatcgattactacaagtcgaaggtgatcgatctggccaacatccag
gtcgtagtactggacgaagcggatcgcatgttcgatctgggcttcatcaaggacatccgc
ttcctgttccgccgcatgccggccgccggtgatcgactcaacatgctgttctctgccacc
ctctcgctgcgcgtgcaagagctggcctacgagcacatgaccaacccgcaccatgtgcag
gtggagccggagcagatgaccggtgttcgcatcaaggaggagctcttctacccctccaac
gaagacaagatgctgctgctgctcaccctgatggaagaagagtggccggacaaggcgatc
gtgttcgccaacaccaagcactgctgcgaagacatccatgcctggctggaggctgatggt
caccgcgtcggcctgctgaccggcgacgtgccgcagaaaaagcgcatgaagatccttgag
gagttcactcagggcaagctcgatatcctggtcgccaccgatgtggccgcccgtggcctg
cacatccctgacgtcacccacgtcttcaactacgacctgccggatgatgccgaagattac
gtgcatcgcatcggtcgtaccggccgtgccggtaagagcggccactccatcagcctggcg
tgtgaagactatgccttcaacctgccggccatcgaggagtacatccgccatccgatcccg
gtcagcaagtacgaccgcgaggcactgcttaccgatgtcaccccgccgcgccgtgtgcag
cgcaaccgcccgccggtgaatcgcaacatgcgcgatcgccagggtggtggcggtaaccgt
cgtcgtccccccaagcgcacctga
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