KEGG   Aquicella siphonis: AQUSIP_04050
Entry
AQUSIP_04050      CDS       T06267                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
asip  Aquicella siphonis
Pathway
asip02024  Quorum sensing
asip03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asip00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AQUSIP_04050 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AQUSIP_04050 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asip03019]
    AQUSIP_04050 (hfq)
   03036 Chromosome and associated proteins [BR:asip03036]
    AQUSIP_04050 (hfq)
Messenger RNA biogenesis [BR:asip03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AQUSIP_04050 (hfq)
Chromosome and associated proteins [BR:asip03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AQUSIP_04050 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: VVC75129
UniProt: A0A5E4PDU3
LinkDB
Position
1:430595..430900
AA seq 101 aa
MTKGPSLQDPFLNSLRKEKIPVSIYLVNGIKLQGVIESFDQFVVLLKNTVSQMVYKHAIS
TIVPARNVSSPFEYTTGGFNTNGNGNKNNGNSSKSNLPPHE
NT seq 306 nt   +upstreamnt  +downstreamnt
atgacaaaaggaccatcattacaagatcctttcctgaactctttgcgcaaggaaaaaatc
cctgtttctatctatttggtaaacggaatcaaactccagggagtgattgagtcgtttgat
caatttgtggttttgttgaaaaacaccgtcagccagatggtgtataagcacgcgatttcc
actattgtgccggcgcgcaacgtgtcttcaccctttgaatatacgaccggcgggtttaac
accaatggtaatggaaataaaaacaatggcaatagcagcaaatctaacttgccgccccat
gaatag

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